MirGeneDB 2.1

MirGeneDB ID

Cel-Mir-71

Family name MIR-71 (all species)
Seed GAAAGAC
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-71
Paralogues
Orthologues Aae-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cgi-Mir-71  Csc-Mir-71-P14  Csc-Mir-71-P15  Cte-Mir-71  Dma-Mir-71  Dpu-Mir-71  Efe-Mir-71-P1  Efe-Mir-71-P2  Efe-Mir-71-P3  Esc-Mir-71  Hme-Mir-71  Isc-Mir-71  Lan-Mir-71-P4  Lan-Mir-71-P5  Lgi-Mir-71  Lpo-Mir-71-P7  Lpo-Mir-71-P8  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13  Npo-Mir-71  Obi-Mir-71  Ovu-Mir-71  Pfl-Mir-71  Pmi-Mir-71  Sko-Mir-71  Sme-Mir-71-P16a  Sme-Mir-71-P16b  Sme-Mir-71-P17  Sme-Mir-71-P18  Sme-Mir-71-P19  Spu-Mir-71  Tca-Mir-71 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(ce11)
chrI: 9379947-9380005 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-71)
Mir-9-P15 chrI: 9332964-9333027 [+] UCSC Ensembl
Mir-2-o3 chrI: 9372783-9372846 [-] UCSC Ensembl
Mir-71 chrI: 9379947-9380005 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCACACACAGAGGUUGUCUGCUCUGAACGAUGAAAGACAUGGGUAGUGAGACGUCGGAGCCUCGUCGUAUCACUAUUCUGUUUUUCGCCGUCGGGAUCGUGACCUGGAAGCUGUAAACU
Get precursor sequence
Structure
        10        20           30        40        50         
UCACACACAGAGGUUGUCUGC---|    A  A         U         G   UCGGA 
                        UCUGA CG UGAAAGACA GGGUAGUGA ACG     G
                        GGGCU GC GCUUUUUGU CUUAUCACU UGC     C
UCAAAUGUCGAAGGUCCAGUGCUA^    -  C         -         A   UGCUC 
       110       100         90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Wt Da Ea Mi Yo Yo
Mature sequence

Cel-Mir-71_5p

mirBase accessionMIMAT0000043
Sequence
0- UGAAAGACAUGGGUAGUGAGACG -23
Get sequence
Proposed targets microrna.org: MIMAT0000043
TargetScanWorm: cel-miR-71
Star sequence

Cel-Mir-71_3p*

mirBase accessionMIMAT0015107
Sequence
37- UAUCACUAUUCUGUUUUUCGCC -59
Get sequence
Proposed targets microrna.org: MIMAT0015107