Mir-64-P3

MirGeneDB ID

Cel-Mir-64-P3

Family name

MIR-64 (all species)

Seed

AUGACAC

Species

Roundworm (Caenorhabditis elegans)

MiRBase ID

cel-mir-66

Paralogues

Cel-Mir-64-P1 Cel-Mir-64-P2

Orthologues

Cbr-Mir-64-o3

Node of Origin (locus)

C. elegans

Node of Origin (family)

Caenorhabditis

Genome context
(ce11)

chrIII: 2173124-2173188 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-64-P3)

Mir-229 chrIII: 2172459-2172561 [+] UCSC Ensembl
Mir-64-P1 chrIII: 2172869-2172936 [+] UCSC Ensembl
Mir-64-P2 chrIII: 2173019-2173080 [+] UCSC Ensembl
Mir-64-P3 chrIII: 2173124-2173188 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCAUUAAAAAACGGCCACAAAAAUGCCAUACAUGACACUGAUUAGGGAUGUGAUGAAUGUUAAGAUCCCGAUCAAAUUCCUAACGGUGUCAAACAUGGCGUAUGUGGUUGUAGUUGGUGAGCUUU

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Structure

        10          20        30        40        50        60  
CCAUUAAAAAACGGCCA--| AAA       ACA        A        G   UGAAUGUU 
                   CA   AUGCCAU   UGACACUG UUAGGGAU UGA        A
                   GU   UGCGGUA   ACUGUGGC AAUCCUUA ACU        A
UUUCGAGUGGUUGAUGUUG^ GUA       CAA        -        A   AGCCCUAG 
   120       110       100        90         80        70

Deep sequencing

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Comment

There is a second Dicer cut +2 on the 3p arm.

3' NTU

Motifs

Tissue expression

Wt	Da	Ea	Mi	Yo	Yo

Mature sequence

Cel-Mir-64-P3_5p

mirBase accession

MIMAT0000038

Sequence

0- CAUGACACUGAUUAGGGAUGUGA -23

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Proposed targets

microrna.org: MIMAT0000038
TargetScanWorm: cel-miR-66

Star sequence

Cel-Mir-64-P3_3p*

mirBase accession

MIMAT0020315

Sequence

43- AAAUUCCUAACGGUGUCAAACA -65

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