MirGeneDB 2.1

MirGeneDB ID

Cel-Mir-4808

Family name MIR-4808 (all species)
Seed AGCUCUA
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-4808
Paralogues
Orthologues
Node of Origin (locus) C. elegans
Node of Origin (family) C. elegans
Genome context
(ce11)
chrX: 1872952-1873008 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUCCCCGUGUGCUUGCAUUGCUAAACAUGGUAAGAUAGAUUAGUGCUUUCAAUUAUUUCAAACGAAAGCUCUAUUCUCUCUUACAGAUAUUGAGAUCACGCAAAACAAGAUGAAAG
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Structure
        10        20        30          40        50        
GCUCCCCGUGUGCUUGCAUUGCUAAACAUG--|     U   U   U      AAUUAU 
                                GUAAGA AGA UAG GCUUUC      \
                                CAUUCU UCU AUC CGAAAG      U
GAAAGUAGAACAAAACGCACUAGAGUUAUAGA^     C   U   U      CAAACU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Wt Da Ea Mi Yo Yo
Star sequence

Cel-Mir-4808_5p*

mirBase accessionMIMAT0019991
Sequence
0- GUAAGAUAGAUUAGUGCUUUC -21
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Mature sequence

Cel-Mir-4808_3p

mirBase accessionMIMAT0019992
Sequence
36- AAGCUCUAUUCUCUCUUACAG -57
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