MirGeneDB 2.1
MirGeneDB ID

Cel-Mir-305-P1

Family name MIR-305 (all species)
Seed UUGUACU
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-239a
Paralogues Cel-Mir-305-P2 
Orthologues Aae-Mir-305  Asu-Mir-305  Bge-Mir-305  Cbr-Mir-305-P1  Csc-Mir-305  Dan-Mir-305  Dma-Mir-305  Dme-Mir-305  Dmo-Mir-305  Dpu-Mir-305  Dsi-Mir-305  Dya-Mir-305  Hme-Mir-305  Isc-Mir-305  Tca-Mir-305 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Ecdysozoa
Genome context
(ce11)		 chrX: 11792460-11792524 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-305-P1)		 Mir-305-P2 chrX: 11791321-11791384 [-] UCSC Ensembl
Mir-305-P1 chrX: 11792460-11792524 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAGUCAAAUAACUCUACACGUUUGCAAUUUUUGUACUACACAUAGGUACUGGACAAUUUUCAAAAUAUAUCCAGUGUCUAGUCUAGUGCAAACAUUGCUCGGUGUUGUUUGAAAAAUAAGCUAC
Get precursor sequence
Structure
        10           20        30        40        50        60  
UCAGUCAAAUAACUCUA---|  GUUU     U         C  A   GU     ACAAUUUU 
                    CAC    GCAAU UUUGUACUA AC UAG  ACUGG        C
                    GUG    CGUUA AAACGUGAU UG AUC  UGACC        A
CAUCGAAUAAAAAGUUUGUU^  GCU-     C         C  -   UG     UAUAUAAA 
   120       110       100         90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Wt Da Ea Mi Yo Yo
Mature sequence

Cel-Mir-305-P1_5p
mirBase accessionMIMAT0000294
Sequence 
0- UUUGUACUACACAUAGGUACUGG -23
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Proposed targets microrna.org: MIMAT0000294
TargetScanWorm: cel-miR-239a
Star sequence

Cel-Mir-305-P1_3p*
mirBase accessionMIMAT0020334
Sequence 
43- AGUGUCUAGUCUAGUGCAAACA -65
Get sequence