MirGeneDB 2.1

MirGeneDB ID

Cel-Mir-252-P1

Family name MIR-252 (all species)
Seed UAAGUAG
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-251
Paralogues Cel-Mir-252-P2 
Orthologues Asu-Mir-252-P1  Bfl-Mir-252-P1-v1  Bfl-Mir-252-P1-v2  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Bla-Mir-252-P1-v2  Cbr-Mir-252-P1  Cgi-Mir-252-P1  Csc-Mir-252-P1  Cte-Mir-252-P1  Dan-Mir-252-P1a  Dan-Mir-252-P1b  Dma-Mir-252-P1-v1  Dma-Mir-252-P1-v2  Dme-Mir-252-P1a  Dme-Mir-252-P1b  Dmo-Mir-252-P1a  Dmo-Mir-252-P1b  Dpu-Mir-252-P1  Dsi-Mir-252-P1a  Dsi-Mir-252-P1b  Dya-Mir-252-P1a  Dya-Mir-252-P1b  Esc-Mir-252-P1  Hme-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Lpo-Mir-252-P1c  Lpo-Mir-252-P1e  Lpo-Mir-252-P1f  Npo-Mir-252-P1  Obi-Mir-252-P1  Ovu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Sko-Mir-252-P1  Spu-Mir-252-P1  Tca-Mir-252-P1  Xbo-Mir-252-P1g  Xbo-Mir-252-P1h  Xbo-Mir-252-P1i 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(ce11)
chrX: 11004746-11004806 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUAUUAAUUCAACUUUCAAUGACCCCUUGUUAAGUAGUGGUGCCGCUCUUAUUAGGUUGAAAAGUAAUAAGAGUAGUUCACUACUUAUCAAGGUGAAAUUUGAAAUUUUAUUUCAAUGUG
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Structure
        10         20         30        40        50        60
GUUAUUAAUUCAACUUU-   UGACC-|    U          U  CG        AGGUU 
                  CAA      CCUUG UAAGUAGUGG GC  CUCUUAUU     G
                  GUU      GGAAC AUUCAUCACU UG  GAGAAUAA     A
GUGUAACUUUAUUUUAAA   UAAAGU^    U          -  AU        UGAAA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Wt Da Ea Mi Yo Yo
Mature sequence

Cel-Mir-252-P1_5p

mirBase accessionMIMAT0000307
Sequence
0- UUAAGUAGUGGUGCCGCUCUUAUU -24
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Proposed targets microrna.org: MIMAT0000307
TargetScanWorm: cel-miR-251
Star sequence

Cel-Mir-252-P1_3p*

mirBase accessionNone
Sequence
38- UAAGAGUAGUUCACUACUUAUCA -61
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