MirGeneDB 2.1

MirGeneDB ID

Cbr-Novel-6-P1

Family name CBR-NOVEL-6 (all species)
Seed AAGACAU
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID
Paralogues Cbr-Novel-6-P2 
Orthologues
Node of Origin (locus) C. briggsae
Node of Origin (family) C. briggsae
Genome context
(CB4)
IV: 15800970-15801031 [-] Ensembl
Clustered miRNAs
(< 50kb from Novel-6-P1)
Mir-7591-v1 IV: 15802497-15802558 [+] Ensembl
Mir-7591-v2 IV: 15802497-15802558 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUCUACAGUAACCCCUUCUCAACGGGAGCAAGACAUUCCUGAGACAUGAUUCUAGAAGCUUCCUUGAAUCAGUCUCCGGAAUUUCUGGCCCCCAGCAGAAAGGGGCCAGAAAUUUCCUAC
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Structure
        10           20        30        40        50        60 
AUUUCUACAGUAACCCC---|   CAAC   A  A   C     U     A      UAGAAG 
                    UUCU    GGG GC AGA AUUCC GAGAC UGAUUC      \
                    AAGA    CCC CG UCU UAAGG CUCUG ACUAAG      C
CAUCCUUUAAAGACCGGGGA^   CGAC   -  G   U     C     -      UUCCUU 
120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Mature sequence

Cbr-Novel-6-P1_5p

mirBase accessionNone
Sequence
0- CAAGACAUUCCUGAGACAUGAUUC -24
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Co-mature sequence

Cbr-Novel-6-P1_3p

mirBase accessionNone
Sequence
39- AUCAGUCUCCGGAAUUUCUGGCC -62
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