MirGeneDB 2.1

MirGeneDB ID

Cbr-Novel-5

Family name CBR-NOVEL-5 (all species)
Seed UUGGACU
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. briggsae
Node of Origin (family) C. briggsae
Genome context
(CB4)
IV: 11828226-11828286 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAUUUUGUUCUAGGGGCGUCUUCACAAGUUUGGACUGAGCUCUCCAAAACAUUUUUGGAUUGAAUAGUAUUGGAGAUUCGUUCCAAACUUGUGUUGUCUUUUUUAACGCCUAUACUUUG
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Structure
        10        20          30        40        50        60
AGAAUUUUGUUCUAGGGGCGUCUU--|           C    C       A  AUUUUUG 
                          CACAAGUUUGGA UGAG UCUCCAA AC       G
                          GUGUUCAAACCU GCUU AGAGGUU UG       A
GUUUCAUAUCCGCAAUUUUUUCUGUU^           U    -       A  AUAAGUU 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Mature sequence

Cbr-Novel-5_5p

mirBase accessionNone
Sequence
0- UUUGGACUGAGCUCUCCAAAACAU -24
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Star sequence

Cbr-Novel-5_3p*

mirBase accessionNone
Sequence
39- UAUUGGAGAUUCGUUCCAAACU -61
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