Mir-73-P3b

MirGeneDB ID

Cbr-Mir-73-P3b

Family name

MIR-73 (all species)

Seed

GGCAGUG

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-2227

Paralogues

Cbr-Mir-73-P1a Cbr-Mir-73-P1b Cbr-Mir-73-P2a Cbr-Mir-73-P2b Cbr-Mir-73-P3a

Orthologues

Node of Origin (locus)

C. briggsae

Node of Origin (family)

Caenorhabditis

Genome context
(CB4)

I: 6948910-6948966 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-73-P3b)

Mir-73-P3b I: 6948910-6948966 [-] Ensembl
Mir-73-P3a I: 6952728-6952794 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AUUCUUCGCCACGUGUCUCCAAUGCUCUUCACCUCUAUUUCCACUUCCACCCAAGUAAUUUGAAGUGGCAGUGUAAGUAGCUGGUGAAGAAAUUGUUUUGAGACGAAGAGAGUUGGA

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Structure

        10           20        30         40        50       
AUUCUUCGCCACGUGUCUC---|   GC        U-      C    U    CCAAGU 
                      CAAU  UCUUCACC  CUAUUU CACU CCAC      A
                      GUUA  AGAAGUGG  GAUGAA GUGA GGUG      A
AGGUUGAGAGAAGCAGAGUUUU^   A-        UC      U    C    AAGUUU 
     110       100         90        80        70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

01	02	03	04	05	06	07	08	09	10	11	12	13	14	15	16	Cb	Ea	Ma	Yo

Star sequence

Cbr-Mir-73-P3b_5p*

mirBase accession

None

Sequence

0- ACCUCUAUUUCCACUUCCACC -21

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Mature sequence

Cbr-Mir-73-P3b_3p

mirBase accession

MIMAT0011488

Sequence

35- UGGCAGUGUAAGUAGCUGGUGA -57

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