MirGeneDB 2.1

MirGeneDB ID

Cbr-Mir-54-P3

Family name MIR-54 (all species)
Seed ACCCGUA
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-56
Paralogues Cbr-Mir-54-P1a  Cbr-Mir-54-P1b-v1  Cbr-Mir-54-P1b-v2  Cbr-Mir-54-P1c  Cbr-Mir-54-P2 
Orthologues Asu-Mir-54-o3  Cel-Mir-54-P3 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Chromadorea
Genome context
(CB4)
X: 16963349-16963415 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-54-P3)
Mir-54-P3 X: 16963349-16963415 [-] Ensembl
Mir-54-P2 X: 16963478-16963540 [-] Ensembl
Mir-54-P1b-v1 X: 16963615-16963679 [-] Ensembl
Mir-54-P1b-v2 X: 16963616-16963678 [-] Ensembl
Mir-54-P1a X: 16963777-16963838 [-] Ensembl
Mir-54-P1c X: 16964087-16964152 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACGUUGGAACGGAACAUCAGUUUCUGUUCUCAGGGGAUCCAGUUCCGGUUGUGCCUCAUCUCAAUACCCAGAUGGCACCCGUAUUGCUUCCUCUGAGAAUCGACUGCGUACCGCAUUCAGUCCCAAG
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Structure
        10            20        30        40        50        60    
ACGUUGGAACGGAACAU----|    UCU            UC    UC   UU     UCAUCUCA 
                     CAGUU   GUUCUCAGGGGA  CAGU  CGG  GUGCC        A
                     GUCAG   UAAGAGUCUCCU  GUUA  GCC  CACGG        U
GAACCCUGACUUACGCCAUGC^    C--            UC    U-   --     UAGACCCA 
     120       110         100        90         80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Mir-54-P3_5p*

mirBase accessionMIMAT0011475
Sequence
0- CAGGGGAUCCAGUUCCGGUUGUGCC -25
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Mature sequence

Cbr-Mir-54-P3_3p

mirBase accessionMIMAT0011476
Sequence
45- CACCCGUAUUGCUUCCUCUGAG -67
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