Mir-54-P1b-v1

MirGeneDB ID

Cbr-Mir-54-P1b-v1

Family name

MIR-54 (all species)

Seed

CGAACCU

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-54b

Paralogues

Cbr-Mir-54-P1a Cbr-Mir-54-P1b-v2 Cbr-Mir-54-P1c Cbr-Mir-54-P2 Cbr-Mir-54-P3

Orthologues

Asu-Mir-54-o1 Cel-Mir-54-P1

Node of Origin (locus)

C. briggsae

Node of Origin (family)

Chromadorea

Genome context
(CB4)

X: 16963615-16963679 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-54-P1b-v1)

Mir-54-P3 X: 16963349-16963415 [-] Ensembl
Mir-54-P2 X: 16963478-16963540 [-] Ensembl
Mir-54-P1b-v1 X: 16963615-16963679 [-] Ensembl
Mir-54-P1b-v2 X: 16963616-16963678 [-] Ensembl
Mir-54-P1a X: 16963777-16963838 [-] Ensembl
Mir-54-P1c X: 16964087-16964152 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GAAAGUCAUGAGCACGAGCUGAUCUUUGACUCGAACCUGGACAUCGUUUUGUACACGAAGUCAAGCUGCUGUACCCGUGAUUCCAUGUAUCGAGUCAACGAUCGCCUUUAAAAAUGUGCUUCUUU

Get precursor sequence

Structure

        10           20        30         40        50        60  
GAAAGUCAUGAGCACGA---| U    U         -  C    C    UUUU     CGAAGU 
                    GC GAUC UUGACUCGA AC UGGA AUCG    GUACA      C
                    CG CUAG AACUGAGCU UG ACCU UAGU    CAUGU      A
UUUCUUCGUGUAAAAAUUUC^ -    C         A  U    -    GCC-     CGUCGA 
   120       110        100        90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

01	02	03	04	05	06	07	08	09	10	11	12	13	14	15	16	Cb	Ea	Ma	Yo

Mature sequence

Cbr-Mir-54-P1b-v1_5p

mirBase accession

None

Sequence

0- UCGAACCUGGACAUCGUUUUGUACA -25

Get sequence

Star sequence

Cbr-Mir-54-P1b-v1_3p*

mirBase accession

MIMAT0011494

Sequence

41- UACCCGUGAUUCCAUGUAUCGAGU -65

Get sequence