MirGeneDB 2.1

MirGeneDB ID

Cbr-Mir-36-o16

Family name MIR-36 (all species)
Seed CACCGGG
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-35g-1
Paralogues Cbr-Mir-36-o1  Cbr-Mir-36-o2  Cbr-Mir-36-o3  Cbr-Mir-36-o4  Cbr-Mir-36-o5  Cbr-Mir-36-o6  Cbr-Mir-36-o7a  Cbr-Mir-36-o7b  Cbr-Mir-36-o7c  Cbr-Mir-36-o8a  Cbr-Mir-36-o8b  Cbr-Mir-36-o8c  Cbr-Mir-36-o9  Cbr-Mir-36-o10  Cbr-Mir-36-o11  Cbr-Mir-36-o12  Cbr-Mir-36-o13  Cbr-Mir-36-o14  Cbr-Mir-36-o15  Cbr-Mir-36-o17  Cbr-Mir-36-o18  Cbr-Mir-36-o19  Cbr-Mir-36-o20  Cbr-Mir-36-o21  Cbr-Mir-36-o22  Cbr-Mir-36-o23  Cbr-Mir-36-o24  Cbr-Mir-36-o25  Cbr-Mir-36-o26 
Orthologues Bge-Mir-36  Cgi-Mir-36  Cte-Mir-36  Dma-Mir-36  Dpu-Mir-36  Isc-Mir-36  Npo-Mir-36  Tca-Mir-36 
Node of Origin (locus) C. briggsae
Node of Origin (family) Protostomia
Genome context
(CB4)
X: 15374480-15374545 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-36-o16)
Mir-36-o11 X: 15370852-15370914 [+] Ensembl
Mir-36-o15 X: 15371011-15371072 [+] Ensembl
Mir-36-o2 X: 15371151-15371212 [+] Ensembl
Mir-36-o14 X: 15371290-15371352 [+] Ensembl
Mir-36-o3 X: 15372046-15372108 [+] Ensembl
Mir-36-o4 X: 15372216-15372277 [+] Ensembl
Mir-36-o5 X: 15372356-15372417 [+] Ensembl
Mir-36-o6 X: 15372549-15372611 [+] Ensembl
Mir-36-o7c X: 15372700-15372762 [+] Ensembl
Mir-36-o8c X: 15372864-15372926 [+] Ensembl
Mir-36-o7b X: 15373015-15373077 [+] Ensembl
Mir-36-o8b X: 15373179-15373241 [+] Ensembl
Mir-36-o7a X: 15373330-15373392 [+] Ensembl
Mir-36-o9 X: 15373482-15373545 [+] Ensembl
Mir-36-o8a X: 15373647-15373709 [+] Ensembl
Mir-36-o10 X: 15373788-15373849 [+] Ensembl
Mir-36-o18 X: 15374070-15374131 [+] Ensembl
Mir-36-o16 X: 15374480-15374545 [+] Ensembl
Mir-36-o17 X: 15374624-15374686 [+] Ensembl
Mir-36-o12 X: 15375015-15375077 [+] Ensembl
Mir-36-o26 X: 15378480-15378543 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CUAUUAUUCCGAAUACCUGGGUCGGACCUCCGCUGGUUUUUUUUUCCGCGGUGAUACUUCAAUGCGAAUGUGUAUCACCGGGUAAAAACUGGUAGAGGUCCGAUUCAGUAAAUCCAUCGCUAUCCC
Get precursor sequence
Structure
        10          20        30        40        50        60    
CUAUUAUUCCGAAUACC--|            CG UG      UUUU  G        CUUCAAU 
                   UGGGUCGGACCUC  C  GUUUUU    CC CGGUGAUA       G
                   ACUUAGCCUGGAG  G  CAAAAA    GG GCCACUAU       C
CCCUAUCGCUACCUAAAUG^            AU GU      U---  -        GUGUAAG 
    120       110       100        90            80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Mir-36-o16_5p*

mirBase accessionNone
Sequence
0- CGCUGGUUUUUUUUUCCGCGGUGAUA -26
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Mature sequence

Cbr-Mir-36-o16_3p

mirBase accessionMIMAT0029919
Sequence
44- UCACCGGGUAAAAACUGGUAGA -66
Get sequence