MirGeneDB 2.1

MirGeneDB ID

Cbr-Mir-36-o13

Family name MIR-36 (all species)
Seed CACCGGG
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-35d
Paralogues Cbr-Mir-36-o1  Cbr-Mir-36-o2  Cbr-Mir-36-o3  Cbr-Mir-36-o4  Cbr-Mir-36-o5  Cbr-Mir-36-o6  Cbr-Mir-36-o7a  Cbr-Mir-36-o7b  Cbr-Mir-36-o7c  Cbr-Mir-36-o8a  Cbr-Mir-36-o8b  Cbr-Mir-36-o8c  Cbr-Mir-36-o9  Cbr-Mir-36-o10  Cbr-Mir-36-o11  Cbr-Mir-36-o12  Cbr-Mir-36-o14  Cbr-Mir-36-o15  Cbr-Mir-36-o16  Cbr-Mir-36-o17  Cbr-Mir-36-o18  Cbr-Mir-36-o19  Cbr-Mir-36-o20  Cbr-Mir-36-o21  Cbr-Mir-36-o22  Cbr-Mir-36-o23  Cbr-Mir-36-o24  Cbr-Mir-36-o25  Cbr-Mir-36-o26 
Orthologues Bge-Mir-36  Cgi-Mir-36  Cte-Mir-36  Dma-Mir-36  Dpu-Mir-36  Isc-Mir-36  Lpo-Mir-36-P13  Npo-Mir-36  Tca-Mir-36 
Node of Origin (locus) C. briggsae
Node of Origin (family) Protostomia
Genome context
(CB4)
II: 8378188-8378247 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-36-o13)
Mir-36-o19 II: 8377574-8377633 [+] Ensembl
Mir-36-o20 II: 8377669-8377736 [+] Ensembl
Mir-36-o21 II: 8377847-8377908 [+] Ensembl
Mir-36-o22 II: 8377946-8378013 [+] Ensembl
Mir-36-o24 II: 8378068-8378133 [+] Ensembl
Mir-36-o13 II: 8378188-8378247 [+] Ensembl
Mir-36-o23 II: 8378304-8378369 [+] Ensembl
Mir-36-o1 II: 8378426-8378486 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUUGUCCCCUUCGGCCCAGUUCCGGACACUCGCAGGUUUUUGCUUCGGUGAUAUUCGAAGAGCCGUUAUCACCGGGUGAAAAUUUGCAAGUGUCCGGUAACUGGACAUUUGUCUGUUGUU
Get precursor sequence
Structure
        10         20         30        40        50          
GUUGUCCCCUUCGGCCC-    -|        C         UG  U        UUCGAA 
                  AGUU CCGGACACU GCAGGUUUU  CU CGGUGAUA      \
                  UCAA GGCCUGUGA CGUUUAAAA  GG GCCACUAU      G
UUGUUGUCUGUUUACAGG    U^        A         GU  -        UGCCGA 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Mir-36-o13_5p*

mirBase accessionMIMAT0011469
Sequence
0- CGCAGGUUUUUGCUUCGGUGAUA -23
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Mature sequence

Cbr-Mir-36-o13_3p

mirBase accessionMIMAT0011470
Sequence
38- UCACCGGGUGAAAAUUUGCAAG -60
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