MirGeneDB ID | Cbr-Mir-281-P3 |
Family name |
MIR-281 (all species) |
Seed |
GUCAUGG |
Species |
Roundworm (Caenorhabditis briggsae) |
MiRBase ID |
cbr-mir-46
|
Paralogues |
Cbr-Mir-281-P4
|
Orthologues |
Aae-Mir-281
Asu-Mir-281
Bfl-Mir-281
Bge-Mir-281
Bla-Mir-281
Bpl-Mir-281
Cel-Mir-281-P3
Cgi-Mir-281
Cin-Mir-281
Csc-Mir-281
Cte-Mir-281
Dma-Mir-281
Dpu-Mir-281
Ebu-Mir-281
Esc-Mir-281
Hme-Mir-281
Isc-Mir-281
Npo-Mir-281
Obi-Mir-281
Ovu-Mir-281
Pfl-Mir-281
Sko-Mir-281
Sme-Mir-281
Sto-Mir-281
Tca-Mir-281
|
Node of Origin (locus) |
Caenorhabditis
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Node of Origin (family) |
Bilateria
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Genome context (CB4) |
III: 5569432-5569492 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGGUAAGUUGAAGAGAUACAAGUGAAGCUGAAGAGAGCCGUCUAUUGACAGUUCGCUUGUUUCAUGUGCUGUCAUGGAGUCGCUCUCUUCAGAUGAUCUGAAUCUAAAUGUUAUAUUUUCC
Get precursor sequence
|
Structure | 10 20 30 40 50
UGGUAAGUUGAAGAGAUACA-- UGAAG CG-| U UCGCUUG
AG CUGAAGAGAGC UCUAU GACAGU \
UC GACUUCUCUCG AGGUA CUGUCG U
CCUUUUAUAUUGUAAAUCUAAG UAGUA CUG^ - UGUACUU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | No |
Tissue expression
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Cb |
Ea |
Ma |
Yo |
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Star sequence |
Cbr-Mir-281-P3_5p* |
mirBase accession | None |
Sequence |
0- AAGAGAGCCGUCUAUUGACAGU -22
Get sequence
|
Mature sequence |
Cbr-Mir-281-P3_3p |
mirBase accession | MIMAT0000471 |
Sequence |
39- UGUCAUGGAGUCGCUCUCUUCA -61
Get sequence
|