MirGeneDB 2.1

MirGeneDB ID

Cbr-Mir-279-o7

Family name MIR-279 (all species)
Seed GACUAGA
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-44
Paralogues Cbr-Mir-279-o8a  Cbr-Mir-279-o8b  Cbr-Mir-279-o9  Cbr-Mir-279-o10 
Orthologues Bpl-Mir-279  Cel-Mir-279-o7  Cgi-Mir-279  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Protostomia
Genome context
(CB4)
II: 8891068-8891135 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-o7)
Mir-279-o7 II: 8891068-8891135 [-] Ensembl
Mir-2-o4 II: 8891220-8891282 [-] Ensembl
Mir-36-o25 II: 8891373-8891435 [-] Ensembl
Mir-279-o8a II: 8900359-8900424 [-] Ensembl
Mir-279-o8b II: 8903154-8903219 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGGAAGAGAAAAGAAGAGAGAAGGGCCGAUCUGGAUGUGCUCGUUAGUCAUAGACGAAUCACACUUGAAAGGUCAUAUGACUAGAGACACAUUCAGCUUGGCCUGGAUCUCAACGUUUGAGAUUGAAA
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Structure
        10          20        30         40        50        60    
UGGAAGAGAAAAGAAGA--  GAA       U         -|  GU        GACGAAUCACA 
                   GA   GGGCCGA CUGGAUGUG CUC  UAGUCAUA           \
                   CU   UCCGGUU GACUUACAC GAG  AUCAGUAU           C
AAAGUUAGAGUUUGCAACU  AGG       C         A^  --        ACUGGAAAGUU 
      120       110       100        90          80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsNo
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Mir-279-o7_5p*

mirBase accessionNone
Sequence
0- CUGGAUGUGCUCGUUAGUCAUA -22
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Mature sequence

Cbr-Mir-279-o7_3p

mirBase accessionMIMAT0000469
Sequence
47- UGACUAGAGACACAUUCAGCU -68
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