| MirGeneDB ID | Cbr-Mir-279-o10 |
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| Family name |
MIR-279 (all species) |
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| Seed |
GAGUUCA |
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| Species |
Roundworm (Caenorhabditis briggsae) |
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| MiRBase ID |
cbr-mir-247
|
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| Paralogues |
Cbr-Mir-279-o7
Cbr-Mir-279-o8a
Cbr-Mir-279-o8b
Cbr-Mir-279-o9
|
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| Orthologues |
Bpl-Mir-279
Cel-Mir-279-o10
Cgi-Mir-279
Esc-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lpo-Mir-279-P10
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
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| Node of Origin (locus) |
Caenorhabditis
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| Node of Origin (family) |
Protostomia
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Genome context
(CB4) |
X: 10093683-10093743 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUUCCUAUUCCGAACUUCCUCCCUCCGAGUAGAGUUCAGACCCUGGUGACCUACAGCAGUAGCAUGAGGUGACUAGAGUGCUGAGCUCUCCUUGGUUCAGAGGCAUCAUAUUCAUGCUAUA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUUCCUAUUCCGAACUU- CCU- U -| C G UACAGCA
CCUC CCGAG AGAGUUCAG AC CUGGU ACC G
GGAG GGUUC UCUCGAGUC UG GAUCA UGG U
AUAUCGUACUUAUACUAC ACUU C G^ A G AGUACGA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. |
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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Cb |
Ea |
Ma |
Yo |
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| Mature sequence |
Cbr-Mir-279-o10_5p |
| mirBase accession | None |
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| Sequence |
0- AGAGUUCAGACCCUGGUGACC -21
Get sequence
|
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| Co-mature sequence |
Cbr-Mir-279-o10_3p |
| mirBase accession | MIMAT0029605 |
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| Sequence |
39- UGACUAGAGUGCUGAGCUCUCC -61
Get sequence
|
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