| MirGeneDB ID | Cbr-Mir-252-P1 |
|---|
| Family name |
MIR-252 (all species) |
|---|
| Seed |
UAAGUAG |
|---|
| Species |
Roundworm (Caenorhabditis briggsae) |
|---|
| MiRBase ID |
cbr-mir-251
|
|---|
| Paralogues |
Cbr-Mir-252-P2
|
|---|
| Orthologues |
Asu-Mir-252-P1
Bfl-Mir-252-P1-v1
Bfl-Mir-252-P1-v2
Bge-Mir-252-P1
Bla-Mir-252-P1-v1
Bla-Mir-252-P1-v2
Cel-Mir-252-P1
Cgi-Mir-252-P1
Csc-Mir-252-P1
Cte-Mir-252-P1
Dan-Mir-252-P1a
Dan-Mir-252-P1b
Dma-Mir-252-P1-v1
Dma-Mir-252-P1-v2
Dme-Mir-252-P1a
Dme-Mir-252-P1b
Dmo-Mir-252-P1a
Dmo-Mir-252-P1b
Dpu-Mir-252-P1
Dsi-Mir-252-P1a
Dsi-Mir-252-P1b
Dya-Mir-252-P1a
Dya-Mir-252-P1b
Esc-Mir-252-P1
Hme-Mir-252-P1
Isc-Mir-252-P1
Lan-Mir-252-P1
Lgi-Mir-252-P1
Lpo-Mir-252-P1c
Lpo-Mir-252-P1e
Lpo-Mir-252-P1f
Npo-Mir-252-P1
Obi-Mir-252-P1
Ovu-Mir-252-P1
Pfl-Mir-252-P1
Pmi-Mir-252-P1
Sko-Mir-252-P1
Spu-Mir-252-P1
Tca-Mir-252-P1
Xbo-Mir-252-P1g
Xbo-Mir-252-P1h
Xbo-Mir-252-P1i
|
|---|
| Node of Origin (locus) |
Bilateria
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(CB4) |
X: 5784611-5784672 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUAUACUGUUUUGUCCCAAAUGACAUCUCGUUAAGUAGUGGUGCCGCUCUUAUUAGAAUUAUCAAGUAAUAAGAGUUGUUCGCUACUUAACGAGAGGAAAUUUGGAAAGAUGUGUCAGUUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CUAUACUGUUUUGUCCC--| GACA U C AGAAUU
AAAU UCUCGUUAAGUAGUGG GC GCUCUUAUU \
UUUA AGAGCAAUUCAUCGCU UG UGAGAAUAA A
UGUUGACUGUGUAGAAAGG^ AAGG - U UGAACU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| 01 |
02 |
03 |
04 |
05 |
06 |
07 |
08 |
09 |
10 |
11 |
12 |
13 |
14 |
15 |
16 |
Cb |
Ea |
Ma |
Yo |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Cbr-Mir-252-P1_5p |
| mirBase accession | MIMAT0000506 |
|---|
| Sequence |
0- UUAAGUAGUGGUGCCGCUCUUAUU -24
Get sequence
|
|---|
| Star sequence |
Cbr-Mir-252-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- UAAGAGUUGUUCGCUACUUAACG -62
Get sequence
|
|---|
