MirGeneDB 2.1

MirGeneDB ID

Cbr-Let-7-P5

Family name LET-7 (all species)
Seed GAGGUAG
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-let-7
Paralogues Cbr-Let-7-P6  Cbr-Let-7-P7  Cbr-Let-7-P8 
Orthologues Aae-Let-7  Asu-Let-7-P5  Bge-Let-7  Bpl-Let-7  Cel-Let-7-P5  Cgi-Let-7  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Hme-Let-7  Isc-Let-7  Lan-Let-7  Lgi-Let-7  Npo-Let-7  Obi-Let-7  Ovu-Let-7  Pfl-Let-7  Pmi-Let-7  Sko-Let-7  Spu-Let-7  Tca-Let-7  Xbo-Let-7 
Node of Origin (locus) Chromadorea
Node of Origin (family) Bilateria
Genome context
(CB4)
X: 18534133-18534197 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCAGGAUGAUGGCUCUACACUGGGGUACGGUGAGGUAGUAGGUUGUAUAGUUUAGAAUAUUACUCUCGGUGAACUAUGCAAGUUUCUACCUCACCGAAUACCAGGUUCUCAACUGCAUCGUGUCA
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Structure
        10          20        30        40        50        60  
GCAGGAUGAUGGCUCUACA--|   GG A           U  G          UAGAAUAUU 
                     CUGG  U CGGUGAGGUAG AG UUGUAUAGUU         \
                     GACC  A GCCACUCCAUC UU AACGUAUCAA         A
ACUGUGCUACGUCAACUCUUG^   AU A           U  G          GUGGCUCUC 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Mature sequence

Cbr-Let-7-P5_5p

mirBase accessionMIMAT0000463
Sequence
0- UGAGGUAGUAGGUUGUAUAGUU -22
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Star sequence

Cbr-Let-7-P5_3p*

mirBase accessionNone
Sequence
43- CUAUGCAAGUUUCUACCUCACC -65
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