MirGeneDB 2.1

MirGeneDB ID

Cbr-Bantam-P1b

Family name BANTAM (all species)
Seed GAGAUCA
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-58b
Paralogues Cbr-Bantam-P1a  Cbr-Bantam-P2  Cbr-Bantam-P3  Cbr-Bantam-P4 
Orthologues Aae-Bantam  Asu-Bantam-o1  Bge-Bantam  Bpl-Bantam  Cel-Bantam-P1  Cgi-Bantam  Cte-Bantam  Dan-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Esc-Bantam  Hme-Bantam  Lan-Bantam  Lgi-Bantam  Npo-Bantam  Ovu-Bantam  Tca-Bantam 
Node of Origin (locus) C. briggsae
Node of Origin (family) Protostomia
Genome context
(CB4)
IV: 149584-149644 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CUAUAUAAAAAUUGAAAUUUUCAAUACGUUGGCUUUUUGGCUGGUCUCAUACCGUUUAGUACUGGAUAUGAGAUCAUUCAAGAAGCCCAAAAAAGAGUUCAUUUCAUUCGAAACAUGCUAU
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Structure
        10        20        30            40        50         
CUAUAUAAAAAUUGAAAUUUUCAAUACGUU----|        GC          CCGUUUA 
                                  GGCUUUUUG  UGGUCUCAUA       \
                                  CCGAAGAAC  ACUAGAGUAU       G
UAUCGUACAAAGCUUACUUUACUUGAGAAAAAAC^        UU          AGGUCAU 
 .       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Bantam-P1b_5p*

mirBase accessionNone
Sequence
0- GGCUUUUUGGCUGGUCUCAUA -21
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Mature sequence

Cbr-Bantam-P1b_3p

mirBase accessionMIMAT0011482
Sequence
38- UGAGAUCAUUCAAGAAGCCCAAA -61
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