MirGeneDB 2.1

MirGeneDB ID

Bta-Mir-92-P1a

Family name MIR-92 (all species)
Seed AUUGCAC
Species Cow (Bos taurus)
MiRBase ID bta-mir-92a-1
Paralogues Bta-Mir-92-P1c  Bta-Mir-92-P1d  Bta-Mir-92-P2a  Bta-Mir-92-P2c  Bta-Mir-92-P2d 
Orthologues Aca-Mir-92-P1a  Ami-Mir-92-P1a  Asu-Mir-92  Bfl-Mir-92-o1  Bla-Mir-92-o1  Cel-Mir-92  Cfa-Mir-92-P1a  Cli-Mir-92-P1a  Cmi-Mir-92-P1a  Cpi-Mir-92-P1a  Cpo-Mir-92-P1a  Dno-Mir-92-P1a  Dre-Mir-92-P1a1  Dre-Mir-92-P1a2  Esc-Mir-92  Ete-Mir-92-P1a  Gga-Mir-92-P1a  Gja-Mir-92-P1a  Gmo-Mir-92-P1a1  Gmo-Mir-92-P1a2  Hsa-Mir-92-P1a  Isc-Mir-92  Lch-Mir-92-P1a  Loc-Mir-92-P1a  Mal-Mir-92-P1a1  Mal-Mir-92-P1a2  Mdo-Mir-92-P1a  Mml-Mir-92-P1a  Mmu-Mir-92-P1a  Mun-Mir-92-P1a  Oan-Mir-92-P1a5  Oan-Mir-92-P1a6  Oan-Mir-92-P1a7  Oan-Mir-92-P1a8  Obi-Mir-92  Ocu-Mir-92-P1a  Pbv-Mir-92-P1a  Rno-Mir-92-P1a  Sha-Mir-92-P1a  Sme-Mir-92  Spt-Mir-92-P1a  Sto-Mir-92-P1a  Tgu-Mir-92-P1a  Tni-Mir-92-P1a1  Tni-Mir-92-P1a2  Xla-Mir-92-P1a3  Xla-Mir-92-P1a4  Xtr-Mir-92-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037339.1: 65690128-65690186 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-92-P1a)
Mir-17-P1a NC_037339.1: 65689430-65689489 [+] UCSC Ensembl
Mir-17-P2a NC_037339.1: 65689565-65689629 [+] UCSC Ensembl
Mir-19-P1a NC_037339.1: 65689712-65689769 [+] UCSC Ensembl
Mir-17-P4a NC_037339.1: 65689875-65689933 [+] UCSC Ensembl
Mir-19-P2a NC_037339.1: 65690011-65690071 [+] UCSC Ensembl
Mir-92-P1a NC_037339.1: 65690128-65690186 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUAAGGGAAAAUCAAACCCCUUUCUACACAGGUUGGGAUCGGUUGCAAUGCUGUGUUUCUGUAUGGUAUUGCACUUGUCCCGGCCUGUUGAGUUUGGUGGGGAUUGUGACCAGAAGAU
Get precursor sequence
Structure
        10          20        30        40        50         
AGUAAGGGAAAAUCAAA-  -| UUU  AC            C   U        GUGUU 
                  CC CC   CU  ACAGGUUGGGAU GGU GCAAUGCU     U
                  GG GG   GA  UGUCCGGCCCUG UCA CGUUAUGG     C
UAGAAGACCAGUGUUAGG  U^ UUU  GU            U   -        UAUGU 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Star sequence

Bta-Mir-92-P1a_5p*

mirBase accessionNone
Sequence
0- AGGUUGGGAUCGGUUGCAAUGCU -23
Get sequence
Mature sequence

Bta-Mir-92-P1a_3p

mirBase accessionMIMAT0009383
Sequence
37- UAUUGCACUUGUCCCGGCCUGU -59
Get sequence
Proposed targets TargetScanVert: bta-miR-92a