MirGeneDB 2.1

MirGeneDB ID

Bta-Mir-628

Family name MIR-628 (all species)
Seed UGCUGAC
Species Cow (Bos taurus)
MiRBase ID bta-mir-628
Paralogues
Orthologues Cfa-Mir-628  Dno-Mir-628  Ete-Mir-628  Hsa-Mir-628  Mml-Mir-628  Ocu-Mir-628 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037337.1: 54959667-54959727 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUCGGAGAUAGCUGUUGUGUCACUUCCUCAUGCUGACAUAUUUACUAGAGGGUAAAAUUAAUAACCUUCUAGUAAGAGUGGCAGUCGAAGGGAAGGGCUCAUCUGACUUCUGGAAGCCUG
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Structure
        10           20        30         40        50         
UAUCGGAGAUAGCUGUU---|U   A      CA  -   A   A           GUAAAA 
                    G GUC CUUCCU  UG CUG CAU UUUACUAGAGG      U
                    C CGG GAAGGG  GC GAC GUG GAAUGAUCUUC      U
GUCCGAAGGUCUUCAGUCUA^U   -      AA  U   G   A           CAAUAA 
 .       110       100         90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-628_5p

mirBase accessionMIMAT0009356
Sequence
0- AUGCUGACAUAUUUACUAGAGG -22
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Proposed targets TargetScanVert: bta-miR-628
Star sequence

Bta-Mir-628_3p*

mirBase accessionNone
Sequence
38- UCUAGUAAGAGUGGCAGUCGAAG -61
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