Mir-362-P2-v3

MirGeneDB ID

Bta-Mir-362-P2-v3

Family name

MIR-362 (all species)

Seed

CCACCUG

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-502b

Paralogues

Bta-Mir-362-P1 Bta-Mir-362-P2-v1 Bta-Mir-362-P2-v2 Bta-Mir-362-P4 Bta-Mir-362-P5 Bta-Mir-362-P6

Orthologues

Cfa-Mir-362-P2-v1 Cfa-Mir-362-P2-v2 Dno-Mir-362-P2-v1 Dno-Mir-362-P2-v2 Hsa-Mir-362-P2-v1 Hsa-Mir-362-P2-v2 Mml-Mir-362-P2-v1 Mml-Mir-362-P2-v2 Ocu-Mir-362-P2

Node of Origin (locus)

B. taurus

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 87736191-87736252 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-362-P2-v3)

Mir-188-P2 NC_037357.1: 87724748-87724806 [+] UCSC Ensembl
Mir-188-P1 NC_037357.1: 87725070-87725129 [+] UCSC Ensembl
Mir-362-P6 NC_037357.1: 87732068-87732125 [+] UCSC Ensembl
Mir-362-P2-v1 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P2-v3 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P2-v2 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P1 NC_037357.1: 87736674-87736732 [+] UCSC Ensembl
Mir-362-P5 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-188-P3 NC_037357.1: 87740093-87740151 [+] UCSC Ensembl
Mir-362-P4 NC_037357.1: 87742037-87742095 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGUGGGACCGUCUGUUGUGGCUCCCCUCUCUAAUUCUUGCUCCCCAGGUGAGAGUGCUUUGUGAAUGCAAUCCACCUGGGCAAGGAUUCUGAAUGUGAGAGCUCCCAUCUUCCAUAUGGGAC

Get precursor sequence

Structure

        10         20         30         40        50        60  
CGUGGGACCGUCUGUUGU-     CCCUC-  U-|        UCC       A  GUGCUUUG 
                   GGCUC      UC  AAUUCUUGC   CCAGGUG GA        \
                   UCGAG      AG  UUAGGAACG   GGUCCAC CU        U
CAGGGUAUACCUUCUACCC     AGUGUA  UC^        ---       -  AACGUAAG 
120       110       100        90        80            70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-362-P2-v3_5p*

mirBase accession

None

Sequence

0- UAAUUCUUGCUCCCCAGGUGAGAGU -25

Get sequence

Mature sequence

Bta-Mir-362-P2-v3_3p

mirBase accession

MIMAT0009339

Sequence

40- UCCACCUGGGCAAGGAUUCUGA -62

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Proposed targets

TargetScanVert: bta-miR-502b