MirGeneDB 2.1
MirGeneDB ID

Bta-Mir-3431

Family name MIR-3431 (all species)
Seed CUCAGUC
Species Cow (Bos taurus)
MiRBase ID bta-mir-3431
Paralogues
Orthologues
Node of Origin (locus) B. taurus
Node of Origin (family) B. taurus
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037357.1: 34445022-34445083 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-3431)		 Mir-3431 NC_037357.1: 34445022-34445083 [-] UCSC Ensembl
Mir-224 NC_037357.1: 34446942-34447010 [-] UCSC Ensembl
Mir-452-v1 NC_037357.1: 34447982-34448042 [-] UCSC Ensembl
Mir-452-v2 NC_037357.1: 34447983-34448039 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGGACACGAUACCCAAUGAAUGCGAAAACCUCAGUCAGCCUUGUGGAUGUAUGUUCUGCAGACCUGACAUCUAGAGGACUGACUGAAAUUUUCACUUUCAGCUAAUUCUUCUAUUUUCUU
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Structure
        10          20        30        40         50        60
CAAGGACACGAUACCCAA--    UGC     CC        -|   G       AUGUUCU 
                    UGAA   GAAAA  UCAGUCAG CCUU UGGAUGU       G
                    ACUU   CUUUU  AGUCAGUC GGAG AUCUACA       C
UUCUUUUAUCUUCUUAAUCG    UCA     AA        A^   -       GUCCAGA 
120       110       100        90        80         70
Deep sequencing
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CommentThere is variation in both the Drosha and Dicer cuts but this represents the highest set of reads.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-3431_5p
mirBase accessionMIMAT0017394
Sequence 
0- CCUCAGUCAGCCUUGUGGAUGU -22
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Proposed targets TargetScanVert: bta-miR-3431
Star sequence

Bta-Mir-3431_3p*
mirBase accessionNone
Sequence 
40- AUCUAGAGGACUGACUGAAAUU -62
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