| MirGeneDB ID | Bta-Mir-340 |
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| Family name |
MIR-340 (all species) |
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| Seed |
UAUAAAG |
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| Species |
Cow (Bos taurus) |
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| MiRBase ID |
bta-mir-340
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| Paralogues |
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| Orthologues |
Cfa-Mir-340
Cpo-Mir-340
Dno-Mir-340
Ete-Mir-340
Hsa-Mir-340
Mdo-Mir-340
Mml-Mir-340
Mmu-Mir-340
Ocu-Mir-340
Rno-Mir-340-P1
Rno-Mir-340-P2
Sha-Mir-340-v1
Sha-Mir-340-v2
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| Node of Origin (locus) |
Theria
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| Node of Origin (family) |
Theria
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Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037334.1: 1249039-1249103 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAUUUCUAAAACUGUUUGUACCUGGUGUGAUUAUAAAGCAAUGAGACUGAUUGUCAUGUGUCGUUUGUGGGAUCCGUCUCAGUUACUUUAUAGCCAUACCUGGUAUCUUAUACCACAGAAUAUUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GAUUUCUAAAACUGUUU-- U AU CAA-| U GUCAUGUG
GUACC GGUGUG UAUAAAG UGAGAC GAUU U
UAUGG CCAUAC AUAUUUC ACUCUG CUAG C
GUUAUAAGACACCAUAUUC U CG AUUG^ C GGUGUUUG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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| Mature sequence |
Bta-Mir-340_5p |
| mirBase accession | None |
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| Sequence |
0- UUAUAAAGCAAUGAGACUGAUU -22
Get sequence
|
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| Star sequence |
Bta-Mir-340_3p* |
| mirBase accession | MIMAT0009296 |
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| Sequence |
42- UCCGUCUCAGUUACUUUAUAGCC -65
Get sequence
|
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| Proposed targets |
TargetScanVert: bta-miR-340
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