| MirGeneDB ID | Bta-Mir-339 |
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| Family name |
MIR-339 (all species) |
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| Seed |
CCCUGUC |
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| Species |
Cow (Bos taurus) |
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| MiRBase ID |
bta-mir-339a
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| Paralogues |
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| Orthologues |
Cfa-Mir-339
Cpo-Mir-339
Dno-Mir-339
Ete-Mir-339
Hsa-Mir-339
Mml-Mir-339
Mmu-Mir-339
Ocu-Mir-339
Rno-Mir-339
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037352.1: 41736147-41736203 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCGAGGGCCGCCCAGCUGGGGCAGCCGCUGUCCCUGUCCUCCAGGAGCUCACUUGGUCCGGCCGUGCGCUCCUCGAGGCCAGAGCCCGUGUCUGCUUCCCGCCAGCACCAGCGCCUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CCGAGGGCCGCCCAGCU-- C U-| CC U C U UUGGU
GGGGCAG CGC GU CUG CCUC AGGAGC CAC \
CUUCGUC GUG CG GAC GGAG UCCUCG GUG C
CUCCGCGACCACGACCGCC U CC^ A- C C C CCGGC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | There are Dicer cuts on the 3p arm +1 and +2 but no reads from the predicted (and conserved) star arm. |
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| 3' NTU |
Unknown
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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| Mature sequence |
Bta-Mir-339_5p |
| mirBase accession | MIMAT0009293 |
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| Sequence |
0- UCCCUGUCCUCCAGGAGCUCACU -23
Get sequence
|
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| Proposed targets |
TargetScanVert: bta-miR-339a
|
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| Star sequence |
Bta-Mir-339_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
34- UGCGCUCCUCGAGGCCAGAGCCC -57
Get sequence
|
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