| MirGeneDB ID | Bta-Mir-331 |
|---|
| Family name |
MIR-331 (all species) |
|---|
| Seed |
CCCCUGG |
|---|
| Species |
Cow (Bos taurus) |
|---|
| MiRBase ID |
bta-mir-331
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cfa-Mir-331
Cpo-Mir-331
Dno-Mir-331
Ete-Mir-331
Hsa-Mir-331
Mml-Mir-331
Mmu-Mir-331
Ocu-Mir-331
Rno-Mir-331
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037332.1: 24946436-24946491 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCAAGGAGUUUGGUUUUGUUUGGGUUUGUUCUAGGUAUGGUCCCAGGGAUCCCAGAUCAAACCAGGCCCCUGGGCCUAUCCUAGAACCAACCUAAACUCGCGCAUCAUUCCUGGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCAAGGAGUUUGGUUUU--| U U U AU CCAGAU
GUUUGGGUU GUUCUAGG AUGG CCCAGGG C \
CAAAUCCAA CAAGAUCC UAUC GGGUCCC G C
AAGGUCCUUACUACGCGCU^ C - C CG ACCAAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Drosha cut -1 on both arms. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Bta-Mir-331_5p* |
| mirBase accession | MIMAT0026716 |
|---|
| Sequence |
0- CUAGGUAUGGUCCCAGGGAUCC -22
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: bta-miR-331-5p
|
|---|
| Mature sequence |
Bta-Mir-331_3p |
| mirBase accession | MIMAT0004339 |
|---|
| Sequence |
35- GCCCCUGGGCCUAUCCUAGAA -56
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: bta-miR-331-3p
|
|---|
