| MirGeneDB ID | Bta-Mir-2328 |
|---|
| Family name |
MIR-2328 (all species) |
|---|
| Seed |
CCCCCUC |
|---|
| Species |
Cow (Bos taurus) |
|---|
| MiRBase ID |
bta-mir-2328
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
B. taurus
|
|---|
| Node of Origin (family) |
B. taurus
|
|---|
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037345.1: 39215927-39215988 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGGACCAGGCUGAGGAUGCAGGGGCUCCUCGCCCCCUCCCUUGGUCGCCGGCUGUUGGUCCUUUUGUCAGUCUGCGUCUGGGGAGGGGGCCAGGGGCUCAUUCUGGCCUGGGGGGCGGGGGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GGGACCAGGCUGAGGAUGCAG--| C U U C UGUUGGUC
GGGCUCCU GCCCCCUCCCU GG CGC GGC \
CUCGGGGA CGGGGGAGGGG CU GCG CUG C
CGGGGGCGGGGGGUCCGGUCUUA^ C U - U ACUGUUUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UG at 5p(-14), UGUG in loop |
|---|
Tissue expression
|
| Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Bta-Mir-2328_5p |
| mirBase accession | MIMAT0011857 |
|---|
| Sequence |
0- GCCCCCUCCCUUGGUCGCCGGC -22
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: bta-miR-2328-5p
|
|---|
| Star sequence |
Bta-Mir-2328_3p* (predicted) |
| mirBase accession | MIMAT0011858 |
|---|
| Sequence |
41- CUGCGUCUGGGGAGGGGGCCA -62
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: bta-miR-2328-3p
|
|---|
