MirGeneDB 2.1

MirGeneDB ID

Bta-Mir-19-P2a

Family name MIR-19 (all species)
Seed GUGCAAA
Species Cow (Bos taurus)
MiRBase ID bta-mir-19b
Paralogues Bta-Mir-19-P1a  Bta-Mir-19-P2c 
Orthologues Aca-Mir-19-P2a  Ami-Mir-19-P2a  Cfa-Mir-19-P2a  Cli-Mir-19-P2a  Cmi-Mir-19-P2a  Cpi-Mir-19-P2a  Cpo-Mir-19-P2a  Dno-Mir-19-P2a  Dre-Mir-19-P2a1  Dre-Mir-19-P2a2  Ete-Mir-19-P2a  Gga-Mir-19-P2a  Gja-Mir-19-P2a  Gmo-Mir-19-P2a1  Gmo-Mir-19-P2a2  Hsa-Mir-19-P2a  Lch-Mir-19-P2a  Loc-Mir-19-P2a  Mal-Mir-19-P2a1  Mal-Mir-19-P2a2  Mdo-Mir-19-P2a  Mml-Mir-19-P2a  Mmu-Mir-19-P2a  Mun-Mir-19-P2a  Oan-Mir-19-P2a5  Oan-Mir-19-P2a6  Ocu-Mir-19-P2a  Pbv-Mir-19-P2a  Rno-Mir-19-P2a  Sha-Mir-19-P2a  Spt-Mir-19-P2a  Sto-Mir-19-P2a  Tgu-Mir-19-P2a  Tni-Mir-19-P2a1  Tni-Mir-19-P2a2  Xla-Mir-19-P2a3  Xla-Mir-19-P2a4  Xtr-Mir-19-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037339.1: 65690011-65690071 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2a)
Mir-17-P1a NC_037339.1: 65689430-65689489 [+] UCSC Ensembl
Mir-17-P2a NC_037339.1: 65689565-65689629 [+] UCSC Ensembl
Mir-19-P1a NC_037339.1: 65689712-65689769 [+] UCSC Ensembl
Mir-17-P4a NC_037339.1: 65689875-65689933 [+] UCSC Ensembl
Mir-19-P2a NC_037339.1: 65690011-65690071 [+] UCSC Ensembl
Mir-92-P1a NC_037339.1: 65690128-65690186 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCCAGUUUACUGAACACUGUUCUAUGGUUAGUUUUGCAGGUUUGCAUCCAGCUGUGUGAUAUUCUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUAGUGAAAAGUCUGUAGAAAAGUA
Get precursor sequence
Structure
        10            20        30         40         50          
GUCCAGUUUACUGAACA----|  UU                 -  -      UC    UGUGUG 
                     CUG  CUAUGGUUAGUUUUGCA GG UUUGCA  CAGC      \
                     GAU  GGUGUCAGUCAAAACGU CC AAACGU  GUCG      A
AUGAAAAGAUGUCUGAAAAGU^  --                 A  U      --    UCUUAU 
 .       110       100          90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Star sequence

Bta-Mir-19-P2a_5p*

mirBase accessionNone
Sequence
0- AGUUUUGCAGGUUUGCAUCCAGC -23
Get sequence
Mature sequence

Bta-Mir-19-P2a_3p

mirBase accessionMIMAT0004337
Sequence
38- UGUGCAAAUCCAUGCAAAACUGA -61
Get sequence
Proposed targets TargetScanVert: bta-miR-19b