MirGeneDB 2.1

MirGeneDB ID

Bta-Mir-188-P2

Family name MIR-188 (all species)
Seed AUGCCUU
Species Cow (Bos taurus)
MiRBase ID bta-mir-532
Paralogues Bta-Mir-188-P1  Bta-Mir-188-P3 
Orthologues Cfa-Mir-188-P2  Cpo-Mir-188-P2  Dno-Mir-188-P2  Hsa-Mir-188-P2  Mml-Mir-188-P2  Mmu-Mir-188-P2  Ocu-Mir-188-P2  Rno-Mir-188-P2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037357.1: 87724748-87724806 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-188-P2)
Mir-188-P2 NC_037357.1: 87724748-87724806 [+] UCSC Ensembl
Mir-188-P1 NC_037357.1: 87725070-87725129 [+] UCSC Ensembl
Mir-362-P6 NC_037357.1: 87732068-87732125 [+] UCSC Ensembl
Mir-362-P2-v1 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P2-v3 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P2-v2 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P1 NC_037357.1: 87736674-87736732 [+] UCSC Ensembl
Mir-362-P5 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-188-P3 NC_037357.1: 87740093-87740151 [+] UCSC Ensembl
Mir-362-P4 NC_037357.1: 87742037-87742095 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCAAACGUCCUGACUUGCUUUCUCUCUUACAUGCCUUGAGUGUAGGACCGUUGGCAUCUUAAUUACCCUCCCACACCCAAGGCUUGCAGGAGAGCCAGCCUUUUCCUCCCUCGGCAGU
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Structure
        10          20        30        40        50         
AGCAAACGUCCUGACUU--|  UU       A  U      A    A   CC  UGGCAU 
                   GCU  CUCUCUU CA GCCUUG GUGU GGA  GU      \
                   CGA  GAGAGGA GU CGGAAC CACA CCU  CA      C
UGACGGCUCCCUCCUUUUC^  CC       C  U      C    C   CC  UUAAUU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-188-P2_5p

mirBase accessionMIMAT0003848
Sequence
0- CAUGCCUUGAGUGUAGGACCGU -22
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Proposed targets TargetScanVert: bta-miR-532
Star sequence

Bta-Mir-188-P2_3p*

mirBase accessionNone
Sequence
37- CCUCCCACACCCAAGGCUUGCA -59
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