MirGeneDB 2.1

MirGeneDB ID

Bta-Mir-149

Family name MIR-149 (all species)
Seed CUGGCUC
Species Cow (Bos taurus)
MiRBase ID bta-mir-149
Paralogues
Orthologues Cfa-Mir-149  Cpo-Mir-149  Dno-Mir-149  Ete-Mir-149  Hsa-Mir-149  Mml-Mir-149  Mmu-Mir-149  Ocu-Mir-149  Rno-Mir-149 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037330.1: 119882813-119882874 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGCCCGGGGCCCCAGGCCGGCGCCCAGGCUCUGGCUCCGUGUCUUCACUCCCGUGUGUGUCCACCGAGGGAGGGAGGGACGGGGGCUGUGCUGGGGCGGCCGGGAGAGCGCGGGCGCCCGG
Get precursor sequence
Structure
        10         20         30         40        50        60 
CCGCCCGGGGCCCCAGG-    -|    A   UCU      -  G     A     GUGUGUG 
                  CCGG CGCCC GGC   GGCUCC GU UCUUC CUCCC       \
                  GGCC GCGGG UCG   UCGGGG CA GGAGG GAGGG       U
GGCCCGCGGGCGCGAGAG    G^    G   UG-      G  G     -     AGCCACC 
120       110       100        90         80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-149_5p

mirBase accessionMIMAT0024570
Sequence
0- UCUGGCUCCGUGUCUUCACUCCC -23
Get sequence
Proposed targets TargetScanVert: bta-miR-149-5p
Star sequence

Bta-Mir-149_3p*

mirBase accessionMIMAT0024571
Sequence
40- GAGGGAGGGACGGGGGCUGUGC -62
Get sequence
Proposed targets TargetScanVert: bta-miR-149-3p