| MirGeneDB ID | Bta-Mir-1296 |
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| Family name |
MIR-1296 (all species) |
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| Seed |
UAGGGCC |
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| Species |
Cow (Bos taurus) |
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| MiRBase ID |
bta-mir-1296
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| Paralogues |
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| Orthologues |
Cfa-Mir-1296
Cpo-Mir-1296
Dno-Mir-1296
Ete-Mir-1296
Hsa-Mir-1296
Mml-Mir-1296
Ocu-Mir-1296
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| Node of Origin (locus) |
Eutheria
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| Node of Origin (family) |
Eutheria
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Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037355.1: 19489854-19489918 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGAAAUCAACGAGUUGCCUACCUAACUGGGUUAGGGCCCUGGCUCCAUCUCCUUUAGGAAAACCUUCUGUGGGGAGUGGGGCUUUGACCCUAACCUAGCUGGGCUGUAACACUGCUGCAUUUUCU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UGAAAUCAACGAGUUGCCUA--| A CCCU U UUAGGAAA
CCUA CUGGGUUAGGG GGCUCCA CUCCU A
GGGU GAUCCAAUCCC UCGGGGU GAGGG C
UCUUUUACGUCGUCACAAUGUC^ C AGUU - GUGUCUUC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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| Mature sequence |
Bta-Mir-1296_5p |
| mirBase accession | MIMAT0009964 |
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| Sequence |
0- UUAGGGCCCUGGCUCCAUCUCCU -23
Get sequence
|
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| Proposed targets |
TargetScanVert: bta-miR-1296
|
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| Star sequence |
Bta-Mir-1296_3p* |
| mirBase accession | None |
|---|
| Sequence |
44- AGUGGGGCUUUGACCCUAACC -65
Get sequence
|
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