| MirGeneDB ID | Bge-Novel-20 |
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| Family name |
BGE-NOVEL-20 (all species) |
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| Seed |
CGUAACC |
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| Species |
Cockroach (Blattella germanica) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
B. germanica
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| Node of Origin (family) |
B. germanica
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Genome context
(Bger_2.0) |
KZ614859.1: 604497-604556 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAGGGGAAGAUCUAAAUUAUUAUUCGGCACUCGUAACCGUAGCCCCUGGUUACAGUAAAUAAUUCGUUAACCAGAGUUACCGUUACGAUUGUCAAAUAAUAAAUAUUCAACGGCCUUAAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAGGGGAAGAUCUAAAU--| C C C CC CAGUAAA
UAUUAUU GGCA UCGUAAC GUAGC CUGGUUA \
AUAAUAA CUGU AGCAUUG CAUUG GACCAAU U
UAAUUCCGGCAACUUAUAA^ A U C A- UGCUUAA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ad |
Ad |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
Co |
Co |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
No |
No |
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| Mature sequence |
Bge-Novel-20_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCGUAACCGUAGCCCCUGGUUA -22
Get sequence
|
|---|
| Star sequence |
Bge-Novel-20_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- ACCAGAGUUACCGUUACGAUU -60
Get sequence
|
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