MirGeneDB 2.1

MirGeneDB ID

Bge-Mir-92-o65

Family name MIR-92 (all species)
Seed AUUGCAC
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues Bge-Mir-92-o63  Bge-Mir-92-o64  Bge-Mir-92-o66 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) B. germanica
Node of Origin (family) Bilateria
Genome context
(Bger_2.0)
KZ616963.1: 116285-116343 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AACAACAUGAAGAUGUUGCUAGCUCCUUUCAGGCUGUGACUUGUGCAAGUUUUGUGAUAUAUGAUCAAAUUGCACUUGUCCCGGCCUGAAGGUACUAGUUUGACACAUGCUCAUCCCAU
Get precursor sequence
Structure
        10           20        30        40        50          
AACAACAUGAAGAUGUU---|    CU    U       U   UU      GU    UGAUA 
                    GCUAG  CCUU CAGGCUG GAC  GUGCAA  UUUG     \
                    UGAUC  GGAA GUCCGGC CUG  CACGUU  AAAC     U
UACCCUACUCGUACACAGUU^    AU    -       C   UU      --    UAGUA 
       110       100        90         80        70
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Ad Ad Ny Ny Ny Ny Ny Ny Ny Ny Ov Co Co Em Em Em Em Em Em Em Em Em Em No No
Star sequence

Bge-Mir-92-o65_5p*

mirBase accessionNone
Sequence
0- AGGCUGUGACUUGUGCAAGUUUUG -24
Get sequence
Mature sequence

Bge-Mir-92-o65_3p

mirBase accessionNone
Sequence
37- AAUUGCACUUGUCCCGGCCUGA -59
Get sequence