MirGeneDB 2.1

MirGeneDB ID

Bge-Mir-92-o64

Family name MIR-92 (all species)
Seed AUUGCAC
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues Bge-Mir-92-o63  Bge-Mir-92-o65  Bge-Mir-92-o66 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) B. germanica
Node of Origin (family) Bilateria
Genome context
(Bger_2.0)
KZ615620.1: 336987-337043 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCUUCUUUUCACCACUGGUGAGCAGCACAGGCCGUGUCAGGUGCACUUUGUAAUAUUCGCUCAAAUUGCACUUGUCCCGGCCUGCCUUGCCCACGCUUUCACAAGUUUUCAAUCA
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Structure
        10          20        30        40        50        
CUGCUUCUUUUCACCACUG--|  A    CA       UGU        C    UAAUA 
                     GUG GCAG  CAGGCCG   CAGGUGCA UUUG     \
                     CAC CGUU  GUCCGGC   GUUCACGU AAAC     U
ACUAACUUUUGAACACUUUCG^  C    CC       CCU        U    UCGCU 
     110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsNo
Tissue expression
 +
Ad Ad Ny Ny Ny Ny Ny Ny Ny Ny Ov Co Co Em Em Em Em Em Em Em Em Em Em No No
Star sequence

Bge-Mir-92-o64_5p*

mirBase accessionNone
Sequence
0- AGGCCGUGUCAGGUGCACUUUG -22
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Mature sequence

Bge-Mir-92-o64_3p

mirBase accessionNone
Sequence
35- AAUUGCACUUGUCCCGGCCUGC -57
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