MirGeneDB ID | Bge-Mir-9-o13 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Cockroach (Blattella germanica) |
MiRBase ID |
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Paralogues |
Bge-Mir-9-o11-v1
Bge-Mir-9-o11-v2
Bge-Mir-9-o12
Bge-Mir-9-o14
|
Orthologues |
Aae-Mir-9-P13
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cin-Mir-9
Cte-Mir-9
Dan-Mir-9-P13
Dme-Mir-9-P13
Dmo-Mir-9-P13
Dsi-Mir-9-P13
Dya-Mir-9-P13
Esc-Mir-9
Isc-Mir-9
Lan-Mir-9
Lgi-Mir-9
Npo-Mir-9
Obi-Mir-9
Ovu-Mir-9
Pmi-Mir-9
Spu-Mir-9
Xbo-Mir-9
|
Node of Origin (locus) |
B. germanica
|
Node of Origin (family) |
Bilateria
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Genome context (Bger_2.0) |
KZ616519.1: 74858-74917 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
ACAUCACACGCAAGUUUGGCGCUGAUUUUUUCUUUGGUUAUCUAGCUGUAUGAGUGAAAUGAGCGUCAUAAAGCUAGGUUACCGAAGUUAAGAACAGCACCUCUUCAUCAAAAGGCGCGC
Get precursor sequence
|
Structure | 10 20 30 40 50
ACAUCACACGCAAGUUU--| C A UU U G GUGAA
GG GCUG UUUU CUUUGGU AUCUAGCU UAUGA A
CC CGAC AGAA GAAGCCA UGGAUCGA AUACU U
CGCGCGGAAAACUACUUCU^ A A UU U A GCGAG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Ad |
Ad |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
Co |
Co |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
No |
No |
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Mature sequence |
Bge-Mir-9-o13_5p |
mirBase accession | None |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Bge-Mir-9-o13_3p* |
mirBase accession | None |
Sequence |
37- AUAAAGCUAGGUUACCGAAGUUA -60
Get sequence
|