MirGeneDB 2.1

MirGeneDB ID

Bfl-Mir-2070

Family name MIR-2070 (all species)
Seed UUCCACA
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-2070
Paralogues
Orthologues Bla-Mir-2070-P1  Bla-Mir-2070-P2 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049987.1: 24240350-24240409 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UCUCUCAGCGACAGUCGGGUGUGACGGGUGUUUCCACAGCCUCUACACAUGUGGGCAUACUACAGCGCAUGUGCAUUAGCUGUGGGAUCACUCUGUACACCGUUAUACAACAGGAGACAC
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Structure
        10          20        30        40        50         
UCUCUCAGCGACAGUCG--|     AC     U         CUCUA       GGGCAU 
                   GGUGUG  GGGUG UUCCACAGC     CACAUGU      A
                   CCACAU  CUCAC AGGGUGUCG     GUGUACG      C
CACAGAGGACAACAUAUUG^     GU     U         AUUAC       CGACAU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Bfl-Mir-2070_5p

mirBase accessionMIMAT0009998
Sequence
0- UUUCCACAGCCUCUACACAUGU -22
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Star sequence

Bfl-Mir-2070_3p*

mirBase accessionMIMAT0019171
Sequence
38- AUGUGCAUUAGCUGUGGGAUCA -60
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