MirGeneDB ID | Asu-Mir-9-o17 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Large roundworm (Ascaris suum) |
MiRBase ID |
asu-mir-9
|
Paralogues |
Asu-Mir-9-o18
|
Orthologues |
Bfl-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cgi-Mir-9-P17
Cin-Mir-9
Cte-Mir-9
Esc-Mir-9
Isc-Mir-9
Lan-Mir-9
Lgi-Mir-9
Npo-Mir-9
Obi-Mir-9
Ovu-Mir-9
Pmi-Mir-9
Spu-Mir-9
Xbo-Mir-9
|
Node of Origin (locus) |
A. suum
|
Node of Origin (family) |
Bilateria
|
Genome context (ASU_PRJNA80881_plustraces) |
Scaffold703: 302189-302252 [+]
|
Precursor (pre-Mir +30nt flank) |
UGCACAGGUUUUUCAUCGCAGUUGGCAAUUUCUUUGGUUAUCUAGCUGUAUGAGUACCGCGUUUAGUCGUCAUAAAGCUGGACGACCGAAGUAAUGGCCGCUGAUCGUAUGCCAUAUCCGACAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGCACAGGUUUUUCAUCG---| U A U UA G GUACCGC
CAGU GGC AUU CUUUGGU UCUAGCU UAUGA G
GUCG CCG UAA GAAGCCA AGGUCGA AUACU U
UACAGCCUAUACCGUAUGCUA^ - G U GC A GCUGAUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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0h |
11 |
12 |
24 |
46 |
64 |
6d |
7d |
8d |
96 |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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Mature sequence |
Asu-Mir-9-o17_5p |
mirBase accession | MIMAT0021431 |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Asu-Mir-9-o17_3p* |
mirBase accession | MIMAT0021432 |
Sequence |
41- AUAAAGCUGGACGACCGAAGUAA -64
Get sequence
|