MirGeneDB

MirGeneDB ID

Asu-Mir-2-o62a

Family name MIR-2 (all species)
Seed AUCACAG
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-43b
Paralogues Asu-Mir-2-o58a  Asu-Mir-2-o58b  Asu-Mir-2-o59  Asu-Mir-2-o60  Asu-Mir-2-o61  Asu-Mir-2-o62b  Asu-Mir-2-o62c  Asu-Mir-2-o62d  Asu-Mir-2-P11 
Orthologues
Node of Origin (locus) A. suum
Node of Origin (family) Protostomia
Genome context
(ASU_PRJNA80881_plustraces)
Scaffold1765: 14467-14524 [+]
Clustered MiRNAs
(< 10kb from Mir-2-o62a)
Mir-2-o62a Scaffold1765: 14467-14524 [+]
Mir-279-o29 Scaffold1765: 14642-14699 [+]
Mir-2-o62d Scaffold1765: 14913-14972 [+]
Precursor
(pre-Mir +30nt flank)
AAUGGGCAAAGCUCGACGCGUAUAGCGGCACGUGGCAAAGGUGCUGCGAUGCGCCGCGUUAAAUCGUAUCACAGUUCUUUGUCACCUUUUGCUUCACACGCGUAUUUUCGAUAAAACU
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Structure
        10          20        30        40        50         
AAUGGGCAAAGCUCGAC--|C  AU     CAC          U    C      CCGCG 
                   G GU  AGCGG   GUGGCAAAGG GCUG GAUGCG     \
                   C CA  UCGUU   CACUGUUUCU UGAC CUAUGC     U
UCAAAAUAGCUUUUAUGCG^A  CU     UUC          -    A      UAAAU 
      110       100        90        80         70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and thus these multiple paralogues in invertebrates other than Drosophila are classified here as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
 +
0h 11 12 24 46 64 6d 7d 8d 96 Em La Ov Se Sp Te Zy
Star sequence

Asu-Mir-2-o62a_5p* (predicted)

MirBase accessionMIMAT0021451
Sequence
0- CGUGGCAAAGGUGCUGCGAUGCG -23
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Mature sequence

Asu-Mir-2-o62a_3p

MirBase accessionMIMAT0021452
Sequence
36- UAUCACAGUUCUUUGUCACCUU -58
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