MirGeneDB 2.1

MirGeneDB ID

Asu-Mir-10-P2o4

Family name MIR-10 (all species)
Seed ACCCGUA
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-100c
Paralogues Asu-Mir-10-P1  Asu-Mir-10-P2o3  Asu-Mir-10-P2o5  Asu-Mir-10-P2o6  Asu-Mir-10-P2o7  Asu-Mir-10-P2o8  Asu-Mir-10-P3  Asu-Mir-10-P4 
Orthologues Aae-Mir-10-P2  Bfl-Mir-10-P2-v1  Bfl-Mir-10-P2-v2  Bge-Mir-10-P2  Bla-Mir-10-P2-v1  Bla-Mir-10-P2-v2  Bpl-Mir-10-P2  Cbr-Mir-10-P2  Cel-Mir-10-P2  Cgi-Mir-10-P2  Cin-Mir-10-P2  Cte-Mir-10-P2  Dan-Mir-10-P2  Dma-Mir-10-P2  Dme-Mir-10-P2  Dmo-Mir-10-P2  Dpu-Mir-10-P2  Dsi-Mir-10-P2  Dya-Mir-10-P2  Isc-Mir-10-P2  Lan-Mir-10-P2  Lgi-Mir-10-P2  Lpo-Mir-10-P2o  Npo-Mir-10-P2  Nve-Mir-10  Obi-Mir-10-P2  Ovu-Mir-10-P2  Pfl-Mir-10-P2  Pmi-Mir-10-P2  Sko-Mir-10-P2  Tca-Mir-10-P2  Xbo-Mir-10-P2  Xbo-Mir-10-P2-as 
Node of Origin (locus) A. suum
Node of Origin (family) Eumetazoa
Genome context
(ASU_PRJNA80881_plustraces)
Scaffold883: 121212-121269 [+]
Clustered miRNAs
(< 50kb from Mir-10-P2o4)
Mir-10-P2o4 Scaffold883: 121212-121269 [+]
Mir-10-P2o3 Scaffold883: 122323-122381 [+]
Precursor
(pre-Mir +30nt flank)
UUGGUGGUGGCAUUUAGCCGGUGUGCGGUGUACCCGUAGCUCCGAAAUCGUGUCAGCAUUUGAAUACACGUUUCGUUGCUCGGGUGCCCUGCGCAUAUUUCCGGGGUCUGAGCUGCCU
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Structure
        10        20          30        40        50         
UUGGUGGUGGCAUUUAGCCG--|       U       U   UC     U     CAGCA 
                      GUGUGCGG GUACCCG AGC  CGAAA CGUGU     U
                      UACGCGUC CGUGGGC UCG  GCUUU GCACA     U
UCCGUCGAGUCUGGGGCCUUUA^       C       -   UU     -     UAAGU 
      110       100        90         80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
0h 11 12 24 46 64 6d 7d 8d 96 Em La Ov Se Sp Te Zy
Mature sequence

Asu-Mir-10-P2o4_5p

mirBase accessionMIMAT0021491
Sequence
0- UACCCGUAGCUCCGAAAUCGUGU -23
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Star sequence

Asu-Mir-10-P2o4_3p*

mirBase accessionMIMAT0021492
Sequence
37- ACGUUUCGUUGCUCGGGUGCC -58
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