MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-9600

Family name MIR-9600 (all species)
Seed UUAGACA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-9600
Paralogues
Orthologues
Node of Origin (locus) A. mississippiensis
Node of Origin (family) A. mississippiensis
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017708881.1: 14436153-14436212 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GGAGCAGUGUCUUACUGGGUUGGGAGAGGUUUUAGACAAGCUGUUGAGCCCAGUGGAAGAGCACUUCAUGGCCAAUAGUUUGUCUAAAAUCUCUCCCAACCAUGCACUUGGUCCAAUAAA
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Structure
        10          20        30        40        50          
GGAGCAGUGUCUUACUG--|                            A   CAGUGGAAG 
                   GGUUGGGAGAGGUUUUAGACAAGCUGUUG GCC         \
                   CCAACCCUCUCUAAAAUCUGUUUGAUAAC CGG         A
AAAUAACCUGGUUCACGUA^                            -   UACUUCACG 
.       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Ami-Mir-9600_5p

mirBase accessionMIMAT0038344
Sequence
0- UUUAGACAAGCUGUUGAGCCCAG -23
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Co-mature sequence

Ami-Mir-9600_3p

mirBase accessionMIMAT0038345
Sequence
37- AUGGCCAAUAGUUUGUCUAAAAU -60
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