MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-9599

Family name MIR-9599 (all species)
Seed CUUUGCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-9599
Paralogues
Orthologues
Node of Origin (locus) A. mississippiensis
Node of Origin (family) A. mississippiensis
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017711096.1: 834252-834312 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CAAUGGACAUUUUCAGAGGAAGGCAGGGUAGCUUUGCACCUUACAGACUAACCAAAGUAGACAUAUUGGUUAAUCUAUAGGUGCAAAUCGACCUUGCCUUCUAUUUGACAUCAGACUCGCA
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Structure
        10          20        30        40        50        60
CAAUGGACAUUUUCAGA--|           AGC         UAC   C     AAAGUA 
                   GGAAGGCAGGGU   UUUGCACCU   AGA UAACC      G
                   UCUUCCGUUCCA   AAACGUGGA   UCU AUUGG      A
ACGCUCAGACUACAGUUUA^           GCU         UA-   A     UUAUAC 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ami-Mir-9599_5p

mirBase accessionMIMAT0038342
Sequence
0- GCUUUGCACCUUACAGACUAACC -23
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Co-mature sequence

Ami-Mir-9599_3p

mirBase accessionMIMAT0038343
Sequence
39- UUAAUCUAUAGGUGCAAAUCGA -61
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