MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-430-P3

Family name MIR-430 (all species)
Seed AAGUGCU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-302a
Paralogues Ami-Mir-430-P1  Ami-Mir-430-P2  Ami-Mir-430-P4 
Orthologues Aca-Mir-430-P3  Bta-Mir-430-P3  Cfa-Mir-430-P3  Cli-Mir-430-P3  Cmi-Mir-430-P3  Cpi-Mir-430-P3  Cpo-Mir-430-P3  Dno-Mir-430-P3  Dre-Mir-430-o3a1  Dre-Mir-430-o3a2  Dre-Mir-430-o3a3  Dre-Mir-430-o3a4  Dre-Mir-430-o3a5  Dre-Mir-430-o3a6  Dre-Mir-430-o3a7  Dre-Mir-430-o3a8  Dre-Mir-430-o3a9  Dre-Mir-430-o3a10  Dre-Mir-430-o3a11  Dre-Mir-430-o3a12  Dre-Mir-430-o3a13  Dre-Mir-430-o3a14  Dre-Mir-430-o3a15  Dre-Mir-430-o3a16  Dre-Mir-430-o3b1  Dre-Mir-430-o3b2  Ete-Mir-430-P3  Gga-Mir-430-P3  Gja-Mir-430-P3  Hsa-Mir-430-P3  Mdo-Mir-430-P3  Mml-Mir-430-P3  Mmu-Mir-430-P3  Oan-Mir-430-P3  Ocu-Mir-430-P3  Rno-Mir-430-P3  Sha-Mir-430-P3  Spt-Mir-430-P3  Sto-Mir-430-P3  Tgu-Mir-430-P3  Xla-Mir-430-P3a  Xla-Mir-430-P3b  Xtr-Mir-430-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017713485.1: 214083-214143 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-430-P3)
Mir-430-P1 NW_017713485.1: 213493-213553 [+] UCSC
Mir-430-P2 NW_017713485.1: 213804-213861 [+] UCSC
Mir-430-P3 NW_017713485.1: 214083-214143 [+] UCSC
Mir-430-P4 NW_017713485.1: 214397-214458 [+] UCSC
Mir-92-P2a NW_017713485.1: 214645-214704 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCUUCAGUCUCAGCUUAAAGGACCCCCAGAACUUUAAUGUGGAUGUACUUGCUUUGUUUCUGAAAAAGUAAGUGCUUCCAUGUUUUGGUGCUGGUGAAUCCUGCUCUCUCAACAUGUAAAA
Get precursor sequence
Structure
        10         20         30        40        50          
CCUUCAGUCUCAGCUUAA-    CCC-|   A   UU        U         UUGUUU 
                   AGGA    CCAG ACU  AAUGUGGA GUACUUGCU      \
                   UCCU    GGUC UGG  UUGUACCU CGUGAAUGA      C
AAAAUGUACAACUCUCUCG    AAGU^   G   UU        U         AAAAGU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Star sequence

Ami-Mir-430-P3_5p* (predicted)

mirBase accessionNone
Sequence
0- ACUUUAAUGUGGAUGUACUUGCU -23
Get sequence
Mature sequence

Ami-Mir-430-P3_3p (predicted)

mirBase accessionMIMAT0038264
Sequence
38- UAAGUGCUUCCAUGUUUUGGUGC -61
Get sequence