MirGeneDB 2.1
MirGeneDB ID

Ami-Mir-33-P1

Family name MIR-33 (all species)
Seed UGCAUUG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-33-2
Paralogues Ami-Mir-33-P3 
Orthologues Aae-Mir-33  Aca-Mir-33-P1  Bge-Mir-33  Bta-Mir-33-P1  Cfa-Mir-33-P1  Cgi-Mir-33  Cin-Mir-33  Cli-Mir-33-P1  Cmi-Mir-33-P1  Cpi-Mir-33-P1  Cpo-Mir-33-P1  Csc-Mir-33  Cte-Mir-33  Dan-Mir-33  Dma-Mir-33  Dme-Mir-33  Dmo-Mir-33  Dno-Mir-33-P1  Dpu-Mir-33  Dre-Mir-33-P1a  Dsi-Mir-33  Dya-Mir-33  Ebu-Mir-33  Efe-Mir-33  Esc-Mir-33  Ete-Mir-33-P1  Gga-Mir-33-P1  Gja-Mir-33-P1  Gmo-Mir-33-P1a  Gmo-Mir-33-P1b  Hsa-Mir-33-P1  Isc-Mir-33  Lch-Mir-33-P1  Lgi-Mir-33  Loc-Mir-33-P1  Mal-Mir-33-P1a  Mal-Mir-33-P1b  Mml-Mir-33-P1  Mun-Mir-33-P1  Npo-Mir-33  Oan-Mir-33-P1  Obi-Mir-33  Ocu-Mir-33-P1  Ovu-Mir-33  Pbv-Mir-33-P1  Pfl-Mir-33  Pma-Mir-33-o1  Pmi-Mir-33  Sko-Mir-33  Spt-Mir-33-P1  Spu-Mir-33  Sto-Mir-33-P1  Tca-Mir-33  Tgu-Mir-33-P1  Tni-Mir-33-P1a  Tni-Mir-33-P1b  Xbo-Mir-33  Xla-Mir-33-P1c  Xla-Mir-33-P1d  Xtr-Mir-33-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017708532.1: 1833-1891 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GGACAGCGCGGCGCAGUGGCCUCAGCUGUGGUGCAUUGUAGUUGCAUUGCAUGUGUCACAGAGGUGUGCAAUGCCUCUGCAGUGCAGCCCAGAGGAGGCUCCUCCCAGCACCACGCGCC
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Structure
        10          20        30         40        50         
GGACAGCGCGGCGCAGU--|     AG   U  -          UU        UGUGUCA 
                   GGCCUC  CUG GG UGCAUUGUAG  GCAUUGCA       \
                   UCGGAG  GAC CC ACGUGACGUC  CGUAACGU       C
CCGCGCACCACGACCCUCC^     GA   -  G          UC        GUGGAGA 
       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Ami-Mir-33-P1_5p
mirBase accessionMIMAT0038092
Sequence 
0- GUGCAUUGUAGUUGCAUUGCA -21
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Star sequence

Ami-Mir-33-P1_3p*
mirBase accessionMIMAT0038094
Sequence 
38- CAAUGCCUCUGCAGUGCAGCC -59
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