MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-27-P2

Family name MIR-27 (all species)
Seed UCACAGU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-27b
Paralogues Ami-Mir-27-P3 
Orthologues Aca-Mir-27-P2  Bta-Mir-27-P2  Cfa-Mir-27-P2  Cli-Mir-27-P2  Cmi-Mir-27-P2  Cpi-Mir-27-P2  Cpo-Mir-27-P2  Dno-Mir-27-P2  Dre-Mir-27-P2a  Dre-Mir-27-P2b  Ete-Mir-27-P2  Gga-Mir-27-P2  Gja-Mir-27-P2  Gmo-Mir-27-P2b  Hsa-Mir-27-P2  Lch-Mir-27-P2  Loc-Mir-27-P2  Mal-Mir-27-P2a  Mal-Mir-27-P2b  Mdo-Mir-27-P2  Mml-Mir-27-P2  Mmu-Mir-27-P2  Mun-Mir-27-P2  Oan-Mir-27-P2  Ocu-Mir-27-P2  Pbv-Mir-27-P2  Pma-Mir-27-o2  Rno-Mir-27-P2  Sha-Mir-27-P2  Spt-Mir-27-P2  Sto-Mir-27-P2  Tgu-Mir-27-P2  Tni-Mir-27-P2b  Xla-Mir-27-P2c  Xla-Mir-27-P2d  Xtr-Mir-27-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017713772.1: 16892748-16892810 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-27-P2)
Mir-24-P2 NW_017713772.1: 16892177-16892236 [-] UCSC
Mir-27-P2 NW_017713772.1: 16892748-16892810 [-] UCSC
Mir-23-P2 NW_017713772.1: 16892980-16893039 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GCUCAGACGGAGACCUCUCUGACAAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGAUUUCCCCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAAGAGAAGGUGAGAUGGAAACAUUU
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Structure
        10            20        30        40        50        60  
GCUCAGACGGAGACCUC----|  GACA                  AUUG      AGUGAUUGA 
                     UCU    AGGUGCAGAGCUUAGCUG    GUGAAC         \
                     AGA    UCCACGUCUUGAAUCGGU    CACUUG         U
UUUACAAAGGUAGAGUGGAAG^  AG--                  GA--      UUUCCCCUU 
 120       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Ami-Mir-27-P2_5p*

mirBase accessionMIMAT0038069
Sequence
0- AGAGCUUAGCUGAUUGGUGAAC -22
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Mature sequence

Ami-Mir-27-P2_3p

mirBase accessionMIMAT0038070
Sequence
42- UUCACAGUGGCUAAGUUCUGC -63
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