MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-193-P2a

Family name MIR-193 (all species)
Seed AAUGCCC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-365-1
Paralogues Ami-Mir-193-P1a  Ami-Mir-193-P1b  Ami-Mir-193-P2b 
Orthologues Bge-Mir-193-P2  Bta-Mir-193-P2a  Cbr-Mir-193-P2-v1  Cbr-Mir-193-P2-v2  Cel-Mir-193-P2-v1  Cel-Mir-193-P2-v2  Cfa-Mir-193-P2a  Cgi-Mir-193-P2  Cli-Mir-193-P2a  Cmi-Mir-193-P2a  Cpi-Mir-193-P2a  Cpo-Mir-193-P2a  Cte-Mir-193-P2  Dno-Mir-193-P2a  Dre-Mir-193-P2a  Ebu-Mir-193-P2  Ete-Mir-193-P2a  Gga-Mir-193-P2a  Hme-Mir-193-P2  Hsa-Mir-193-P2a  Lch-Mir-193-P2a  Lgi-Mir-193-P2  Loc-Mir-193-P2a  Mdo-Mir-193-P2a  Mml-Mir-193-P2a  Mmu-Mir-193-P2a  Mun-Mir-193-P2a  Oan-Mir-193-P2a  Ocu-Mir-193-P2a  Pbv-Mir-193-P2a  Pfl-Mir-193-P2  Pma-Mir-193-P2  Pmi-Mir-193-P2  Rno-Mir-193-P2a  Sha-Mir-193-P2a  Sko-Mir-193-P2  Spt-Mir-193-P2a  Spu-Mir-193-P2  Sto-Mir-193-P2a  Tca-Mir-193-P2  Tgu-Mir-193-P2a  Xbo-Mir-193-P2  Xla-Mir-193-P2a3  Xla-Mir-193-P2a4  Xtr-Mir-193-P2a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017711568.1: 5484164-5484224 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-193-P2a)
Mir-193-P2a NW_017711568.1: 5484164-5484224 [-] UCSC
Mir-193-P1a NW_017711568.1: 5490786-5490844 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CCUGCAUGGCUCUUUACCGCAGGGAAAAUGAGGGACUUUUGGGGGCAGUUGUGUUUCCAUUACACUAUCAUAAUGCCCCUAAAAAUCCUUAUUGCUCUUGCAGUAUUCUUCUGUGUUACAG
Get precursor sequence
Structure
        10          20        30        40        50        60 
CCUGCAUGGCUCUUUACC--|     AA        AC           G     UUUCCAU 
                    GCAGGG  AAUGAGGG  UUUUGGGGGCA UUGUG       \
                    CGUUCU  UUAUUCCU  AAAAUCCCCGU AAUAC       U
GACAUUGUGUCUUCUUAUGA^     CG        A-           -     UAUCACA 
 .       110       100        90         80         70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Ami-Mir-193-P2a_5p*

mirBase accessionMIMAT0038271
Sequence
0- AGGGACUUUUGGGGGCAGUUGUG -23
Get sequence
Mature sequence

Ami-Mir-193-P2a_3p

mirBase accessionMIMAT0038272
Sequence
40- UAAUGCCCCUAAAAAUCCUUA -61
Get sequence