MirGeneDB 2.1
MirGeneDB ID

Ami-Mir-181-P1c

Family name MIR-181 (all species)
Seed ACAUUCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-181a-3
Paralogues Ami-Mir-181-P1a  Ami-Mir-181-P1b  Ami-Mir-181-P2a  Ami-Mir-181-P2b  Ami-Mir-181-P2c 
Orthologues Aca-Mir-181-P1c  Bta-Mir-181-P1c  Cfa-Mir-181-P1c  Cmi-Mir-181-P1c  Cpi-Mir-181-P1c  Cpo-Mir-181-P1c  Dno-Mir-181-P1c  Dre-Mir-181-P1c1  Dre-Mir-181-P1c2  Ete-Mir-181-P1c  Gja-Mir-181-P1c  Gmo-Mir-181-P1c1  Gmo-Mir-181-P1c2  Hsa-Mir-181-P1c  Lch-Mir-181-P1c  Loc-Mir-181-P1c  Mal-Mir-181-P1c1  Mal-Mir-181-P1c2  Mdo-Mir-181-P1c  Mml-Mir-181-P1c  Mmu-Mir-181-P1c  Mun-Mir-181-P1c  Oan-Mir-181-P1c  Ocu-Mir-181-P1c  Pbv-Mir-181-P1c  Rno-Mir-181-P1c  Sha-Mir-181-P1c  Spt-Mir-181-P1c  Sto-Mir-181-P1c  Tni-Mir-181-P1c1  Tni-Mir-181-P1c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713323.1: 106446-106507 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-181-P1c)		 Mir-181-P2c NW_017713323.1: 105423-105485 [-] UCSC
Mir-181-P1c NW_017713323.1: 106446-106507 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GAACUAGCAAGAGAUACAAAGGUUUCAGCGAACAUUCAACGCUGUCGGUGAGUUUUGGCAGUCAGGUUAAACCAUCGACCGUUGAGUGUACCCUGCAACCUUGGUAACACCUGAACUGAAGG
Get precursor sequence
Structure
        10          20        30        40        50        60  
GAACUAGCAAGAGAUACA--|     U   CGA          CU       A  UUUGGCAG 
                    AAGGUU CAG   ACAUUCAACG  GUCGGUG GU        \
                    UUCCAA GUC   UGUGAGUUGC  CAGCUAC CA        U
GGAAGUCAAGUCCACAAUGG^     C   CCA          --       -  AAUUGGAC 
120       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-181-P1c_5p
mirBase accessionMIMAT0038186
Sequence 
0- AACAUUCAACGCUGUCGGUGAGU -23
Get sequence
Star sequence

Ami-Mir-181-P1c_3p*
mirBase accessionMIMAT0038189
Sequence 
40- ACCAUCGACCGUUGAGUGUACC -62
Get sequence