MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-1662

Family name MIR-1662 (all species)
Seed UGACAUC
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-1662
Paralogues
Orthologues Aca-Mir-1662  Cli-Mir-1662  Cpi-Mir-1662  Gga-Mir-1662  Gja-Mir-1662-P3  Gja-Mir-1662-P4  Mun-Mir-1662  Pbv-Mir-1662  Spt-Mir-1662  Tgu-Mir-1662  Xla-Mir-1662-P1  Xla-Mir-1662-P2  Xtr-Mir-1662 
Node of Origin (locus) Tetrapoda
Node of Origin (family) Tetrapoda
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017707901.1: 29917428-29917485 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GGACGUCGUGCAGAGCUGUGCUCUAUGGGUUUGACAUCAUCAUACUUGGGAUGUAUGUCACAAAGUCCCAAGAAGGCUGAUGUCAGGCCCAAGAUUGCUGCCAUCCUGUCUUGGUUUA
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Structure
        10           20        30         40        50        
GGACGUCGUGCAGAGCU---| GC   A              -  AUA        GUAUG 
                    GU  UCU UGGGUUUGACAUCA UC   CUUGGGAU     U
                    CG  AGA ACCCGGACUGUAGU GG   GAACCCUG     C
AUUUGGUUCUGUCCUACCGU^ UU   -              C  AA-        AAACA 
      110       100         90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
 +
To
Mature sequence

Ami-Mir-1662_5p

mirBase accessionMIMAT0038318
Sequence
0- UUGACAUCAUCAUACUUGGGAU -22
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Star sequence

Ami-Mir-1662_3p* (predicted)

mirBase accessionNone
Sequence
36- CCCAAGAAGGCUGAUGUCAGGC -58
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