MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-15-P1c

Family name MIR-15 (all species)
Seed AGCAGCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-15c
Paralogues Ami-Mir-15-P1a  Ami-Mir-15-P1b  Ami-Mir-15-P1d  Ami-Mir-15-P2a  Ami-Mir-15-P2b  Ami-Mir-15-P2c  Ami-Mir-15-P2d 
Orthologues Aca-Mir-15-P1c  Bta-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Hsa-Mir-15-P1c  Lch-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1c-v2  Mml-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Mmu-Mir-15-P1c-v2  Mmu-Mir-15-P1c-v3  Mun-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pbv-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Sha-Mir-15-P1c  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017711293.1: 2725269-2725326 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-15-P1c)
Mir-15-P2c NW_017711293.1: 2724727-2724792 [-] UCSC
Mir-15-P1c NW_017711293.1: 2725269-2725326 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UUUCAACAUUCAUUGGGCUUUGAGGAGAUGUAGCAGCACAUCAUGGUUUGUAGGGACAAGGAGAUACAGACCAUUCUGGGCUGCCUCAUUACCUCAAGGAUAAGACAAGAAAUUGAGC
Get precursor sequence
Structure
        10          20        30        40        50        
UUUCAACAUUCAUUGGG--|       A    UA     A  UC          GGGAC 
                   CUUUGAGG GAUG  GCAGC CA  AUGGUUUGUA     A
                   GGAACUCC UUAC  CGUCG GU  UACCAGACAU     A
CGAGUUAAAGAACAGAAUA^       A    UC     G  CU          AGAGG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Ami-Mir-15-P1c_5p

mirBase accessionMIMAT0038040
Sequence
0- UAGCAGCACAUCAUGGUUUGUA -22
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Star sequence

Ami-Mir-15-P1c_3p*

mirBase accessionMIMAT0038041
Sequence
36- CAGACCAUUCUGGGCUGCCUCA -58
Get sequence