MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-130-P1a

Family name MIR-130 (all species)
Seed AGUGCAA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-130b
Paralogues Ami-Mir-130-P1b  Ami-Mir-130-P1c  Ami-Mir-130-P2a  Ami-Mir-130-P2b  Ami-Mir-130-P3a 
Orthologues Aca-Mir-130-P1a  Cli-Mir-130-P1a  Cmi-Mir-130-P1a  Cpi-Mir-130-P1a  Dre-Mir-130-P1a1  Dre-Mir-130-P1a2  Gga-Mir-130-P1a  Gja-Mir-130-P1a  Gmo-Mir-130-P1a1  Gmo-Mir-130-P1a2  Lch-Mir-130-P1a  Loc-Mir-130-P1a  Mal-Mir-130-P1a1  Mal-Mir-130-P1a2  Mdo-Mir-130-P1a  Mun-Mir-130-P1a  Oan-Mir-130-P1a  Pbv-Mir-130-P1a  Sha-Mir-130-P1a  Spt-Mir-130-P1a  Sto-Mir-130-P1a  Tgu-Mir-130-P1a  Tni-Mir-130-P1a2  Xla-Mir-130-P1a3  Xla-Mir-130-P1a4  Xtr-Mir-130-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017709599.1: 25792-25850 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-130-P1a)
Mir-130-P3a NW_017709599.1: 17735-17798 [-] UCSC
Mir-130-P2a NW_017709599.1: 24537-24597 [-] UCSC
Mir-130-P1a NW_017709599.1: 25792-25850 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AAAAGUCUGUGAAGUAUGCUGUUGUCCAGAGCCCUUUUUCUGUUGUACUACUGGCAAUUAUGAUGAGCAGUGCAAUAUUAAAAGGGCAUUGGCUGGCAGAAACAUGACCCCUUUUAGCA
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Structure
        10          20        30        40        50         
AAAAGUCUGUGAAGUAUG--|     U    A        UC         A  GGCAAU 
                    CUGUUG CCAG GCCCUUUU  UGUUGUACU CU      \
                    GACGGU GGUU CGGGAAAA  AUAACGUGA GA      U
ACGAUUUUCCCCAGUACAAA^     C    A        UU         C  GUAGUA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
To
Star sequence

Ami-Mir-130-P1a_5p*

mirBase accessionMIMAT0038141
Sequence
0- GCCCUUUUUCUGUUGUACUACU -22
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Mature sequence

Ami-Mir-130-P1a_3p

mirBase accessionMIMAT0038142
Sequence
37- CAGUGCAAUAUUAAAAGGGCAU -59
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