MirGeneDB 2.1

MirGeneDB ID

Aca-Mir-5407

Family name MIR-5407 (all species)
Seed UUCGGAU
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-5407
Paralogues
Orthologues
Node of Origin (locus) A. carolinensis
Node of Origin (family) A. carolinensis
Genome context
(anoCar2)
GL343282.1: 1475314-1475373 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-5407)
Mir-5452 GL343282.1: 1468406-1468464 [+] UCSC Ensembl
Mir-5408 GL343282.1: 1472528-1472585 [-] UCSC Ensembl
Mir-5406 GL343282.1: 1474914-1474970 [-] UCSC Ensembl
Mir-5407 GL343282.1: 1475314-1475373 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGCCCGGGAUUCCUUUGGGACGGUUCUGUCUUUCGGAUUUUCAGUCACAGUUUCCUUUGUUCUGGCGUCUGUGUGGGAUAAUCCGAAAGAGAAACCCUUCCCUCUGCACCAAGCGUUUGA
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Structure
        10          20         30        40        50         
CGCCCGGGAUUCCUUUG--   C-|   CUG           U  AGU     UUUCCUUU 
                   GGA  GGUU   UCUUUCGGAUU UC   CACAG        G
                   CCU  CCAA   AGAAAGCCUAA AG   GUGUC        U
AGUUUGCGAACCACGUCUC   UC^   AG-           U  GGU     UGCGGUCU 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sk To Wh
Mature sequence

Aca-Mir-5407_5p

mirBase accessionMIMAT0022022
Sequence
0- UUUCGGAUUUUCAGUCACAGUUU -23
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Star sequence

Aca-Mir-5407_3p*

mirBase accessionMIMAT0022023
Sequence
37- UCUGUGUGGGAUAAUCCGAAAGA -60
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