Mir-383-v1

MirGeneDB ID

Aca-Mir-383-v1

Family name

MIR-383 (all species)

Seed

GAUCAGA

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-383

Paralogues

Aca-Mir-383-v2

Orthologues

Ami-Mir-383-v1 Bta-Mir-383-v1 Cfa-Mir-383-v1 Cli-Mir-383-v1 Cpi-Mir-383-v1 Cpo-Mir-383-v1 Dno-Mir-383-v1 Ete-Mir-383-v1 Gga-Mir-383-v1 Gja-Mir-383-v1 Hsa-Mir-383-v1 Mdo-Mir-383-v1 Mml-Mir-383-v1 Mmu-Mir-383-v1 Mun-Mir-383 Oan-Mir-383-v1 Ocu-Mir-383-v1 Pbv-Mir-383-v1 Rno-Mir-383-v1 Sha-Mir-383-v1 Spt-Mir-383 Tgu-Mir-383-v1 Xtr-Mir-383-v1

Node of Origin (locus)

Tetrapoda

Node of Origin (family)

Tetrapoda

Genome context
(anoCar2)

5: 106709396-106709457 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-383-v1)

Mir-383-v1 5: 106709396-106709457 [-] UCSC Ensembl
Mir-383-v2 5: 106709396-106709458 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGGGAGACCCCUCAAGUCACCUGCUCCUCAGAUCAGAAGGUGAUUGUGGCUUUGCUUUUAUAUGAAACAGCCACAGCACUGCCUGGUCAGAAAGAGCAAGUGUACUAGCCUUUUGCCUCAU

Get precursor sequence

Structure

        10         20         30        40        50        60 
CUGGGAGACCCCUCAAGU-   C     C-| A      AA    A        UUGCUUUU 
                   CAC UGCUC  UC GAUCAG  GGUG UUGUGGCU        \
                   GUG ACGAG  AG CUGGUC  UCAC GACACCGA        A
UACUCCGUUUUCCGAUCAU   A     AA^ A      CG    -        CAAAGUAU 
120       110       100        90        80         70